View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2264_high_15 (Length: 264)
Name: NF2264_high_15
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2264_high_15 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 18658966 - 18659229
Alignment:
| Q |
1 |
caatctcattactgaaagtctttgttgctatcttcaactcggagtaactatatcttctgaatcccaataataaatgatgatagttatgttgatctccact |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18658966 |
caatctcattactgaaattctttgttgctatcttcaactcggagtaactatatcttctgaatcccaataatacatgatgatagttatgttgatctccact |
18659065 |
T |
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| Q |
101 |
agaatttttcttggtcttaattaaaaaaccacaaaccgcaacaaagaaaaaggattctaaaccaccaattgtaattgaaagccacagaaaaaacctaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18659066 |
agaatttttcttggtcttaattaaaaaaccacaaaccgcaacaaagaaaaaggattctaaaccaccaattgtaattgaaagccacagaaaaaacctaacc |
18659165 |
T |
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| Q |
201 |
aaatgacttgttggttttataacatagtctttgtgaatctgcacagagcaaacacggtctgcta |
264 |
Q |
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| T |
18659166 |
aaatgacttgttggttttataacatagtccttgtgaagctgcacagagcaaacccggtctgcta |
18659229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 21111844 - 21112080
Alignment:
| Q |
1 |
caatctcattactgaaagtctttgttgctatcttcaactcggagtaactatatcttctgaatcccaataataaatgatgatagttatgttgatctccact |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| |||||||| | |
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| T |
21111844 |
caatctcattactgaaattctttgttgctatcttcaactcggagtaactgtatcttctgaatccaaataatgcatgatgatagttatgtcgatctccatt |
21111943 |
T |
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| Q |
101 |
agaatttttcttggtcttaattaaaaaaccacaaaccgcaacaaagaaaaaggattctaaaccaccaattgtaattgaaagccacagaaaaaacctaacc |
200 |
Q |
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| T |
21111944 |
aggctttttctcggtcttgattaaaaaacaacaaaccacaacaaagaaaaagaattccaagccaccaactgtaactgaaagccacataaaaaacttcaac |
21112043 |
T |
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| Q |
201 |
aaatgacttgttggttttataacatagtctttgtgaa |
237 |
Q |
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| T |
21112044 |
aaatgacttgtttgttttccaacaaagtctttgtgaa |
21112080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 21130804 - 21131040
Alignment:
| Q |
1 |
caatctcattactgaaagtctttgttgctatcttcaactcggagtaactatatcttctgaatcccaataataaatgatgatagttatgttgatctccact |
100 |
Q |
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||||||| ||||||||| | ||||| |||| |||||||||||||||| | |||||||||||||| |||||| | |||||||| ||||||||| | |||| |
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| T |
21130804 |
caatctcgttactgaaattttttgtcgctaccttcaactcggagtaagtgtatcttctgaatcctaataatgtaagatgatagctatgttgatttgcact |
21130903 |
T |
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| Q |
101 |
agaatttttcttggtcttaattaaaaaaccacaaaccgcaacaaagaaaaaggattctaaaccaccaattgtaattgaaagccacagaaaaaacctaacc |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||| | || ||| ||||||||||||||| | ||||| |||||||| || || || | | |
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| T |
21130904 |
agaatttttcctggtcttaattaaaaaaccacaaaccattaagaaacaaactaattctaaaccaccaactacaattgtaagccacaagaacaatctgaac |
21131003 |
T |
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| Q |
201 |
aaatgacttgttggttttataacatagtctttgtgaa |
237 |
Q |
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| T |
21131004 |
aaatgacttgtttgttttctagcatagtctttgtgaa |
21131040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 39131932 - 39131673
Alignment:
| Q |
1 |
caatctcattactgaaagtctttgttgctatcttcaactcggagtaactatatcttctgaatcccaataataaatgatgatagttatgttgatctccact |
100 |
Q |
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||||||||||||||||| |||| ||||| | ||||||||| |||||||| ||||||||||||||||||||| |||||||||| ||| |||||| | | |
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| T |
39131932 |
caatctcattactgaaattcttggttgccaccttcaactccgagtaactgtatcttctgaatcccaataatgtatgatgatagctattttgatccgaagt |
39131833 |
T |
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| Q |
101 |
agaatttttcttggtcttaattaaaaaaccacaaaccgcaacaaagaaaaaggattctaaaccaccaattgtaattgaaagccacagaaaaaacctaacc |
200 |
Q |
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|| |||||| ||||||| | ||||||| || ||||| ||| |||| ||| |||| |||| |||||||| |||||||||||| || |||||| | ||| |
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| T |
39131832 |
agtttttttcgtggtcttgaataaaaaaacaaaaaccacaaaaaagcaaactaattcaaaacaaccaattgcaattgaaagccaaaggaaaaacttcacc |
39131733 |
T |
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| Q |
201 |
aaatgacttgttggttttataacatagtctttgtgaatctgcacagagcaaacacggtct |
260 |
Q |
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|| || |||||||| | |||||||||||||||| || || | |||||||||||| |
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| T |
39131732 |
gtattgtttattggttttttggcatagtctttgtgaatttggaccaaacaaacacggtct |
39131673 |
T |
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