View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2264_high_16 (Length: 260)
Name: NF2264_high_16
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2264_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 42275014 - 42275243
Alignment:
| Q |
16 |
atgacaaattcaataggaaacttagagggtggtgtcttgaaggaaaactcaggacccaaacctccacacctgtagaagtaagttgtgtttggctccaaag |
115 |
Q |
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| T |
42275014 |
atgacaaattcaataggaaacttagagggtggtgtcttgaaggaaaactcaggacccaaacctccacacctgtagaagtaagttgtgtttggctccaaag |
42275113 |
T |
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| Q |
116 |
gcccaatcacagcattgtgtatttttccagaattgtagaaaaaatattggtacgatgtatgnnnnnnnattgttttttcactatactcccctgctttggt |
215 |
Q |
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| T |
42275114 |
gtccaatcacagcattgtgtatttttccagaattgtagaaaaaatattggtacgatgtatgctcccccattgttttttcactatactcccctgctttggt |
42275213 |
T |
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| Q |
216 |
tccatactcaaccatagttactgtttcctt |
245 |
Q |
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| T |
42275214 |
tccatactcaaccatagtttctgtttcctt |
42275243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 26275686 - 26275598
Alignment:
| Q |
19 |
acaaattcaataggaaacttagag-ggtggtgtcttgaaggaaaactcaggacccaaacctccacacctgtagaagtaagttgtgtttgg |
107 |
Q |
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| T |
26275686 |
acaaattcaataggcaactt-gagtggaggtgtcttgaaagaaaactcaggacctgatcctccacatctgtagaagtaagtagtgcttgg |
26275598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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