View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2264_high_2 (Length: 497)
Name: NF2264_high_2
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2264_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 39912751 - 39912348
Alignment:
| Q |
1 |
ggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttccttgttcaaaagcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
39912751 |
ggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatgggaaagtgaggagtttctgtgttcaaaagcag |
39912652 |
T |
|
| Q |
101 |
acatcatttaacgttttcaaggtatcatcatcaattacacttttacaacaggaaaattagagaaaacggaatcttgttaattgatgattgaagtacaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39912651 |
acatcatttaacgttttcaaggtatcatcatcaattacactattacaacgggaaaattagagaaaacggaatcttgttaattgatgattgaagtacaagc |
39912552 |
T |
|
| Q |
201 |
actactgtgattatattgactaagcctaataaatcataatcaagaaaaacaagaatcagatctttcctaataattgtcaccaatggaacctgagaccatc |
300 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
39912551 |
actaatgtgattatattgactaagctgaataactcgtaatcaagaaaaacaagaatcagatctttcctaataattggcaccaatcgaacctgagaccatt |
39912452 |
T |
|
| Q |
301 |
agaggagcactctcccaagtactaaaatattaaaacatgatgctttagttggaaggagaaaaaagtcgtcatttgaataatctgtggtttttatgctttt |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39912451 |
agaggagcactctccaaagtactaaaatattaaaacatgatgctttagttggaaggagaaaaaagtcgtcatatgaataatctgtggtttttatgctttt |
39912352 |
T |
|
| Q |
401 |
gatg |
404 |
Q |
| |
|
|||| |
|
|
| T |
39912351 |
gatg |
39912348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 39899827 - 39899555
Alignment:
| Q |
1 |
ggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttccttgttcaaaagcag |
100 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||| |||||||| |||| |
|
|
| T |
39899827 |
ggtggtacgagacgaagaccttgcaaaacagattggaaaggatatatattttgatcttgtagaccatgacaaagtggggattttctatgttcaaaggcag |
39899728 |
T |
|
| Q |
101 |
acatcatttaacgttttcaaggtatcatcatcaattacacttttacaacaggaaaattagagaaaacggaatcttgttaattgatgattgaagtacaagc |
200 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||||||||| | || || | ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39899727 |
aaatcatttaacgatttaaaggtatcatcatcaattacactatgactaccg-aaaattagagaaaacggaatcttgttaattgataattgaagtacaagc |
39899629 |
T |
|
| Q |
201 |
actactgtgattatattgactaagcctaataaatcataatcaagaaaaacaagaatcagatctttcctaataat |
274 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
39899628 |
actaatgtgattatattgactaagcctaataaatcataatcaagaaaaacaagaaccagatctgtcataataat |
39899555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 38967237 - 38967496
Alignment:
| Q |
11 |
gatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttccttgttcaaaagcagacatcattta |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| ||| ||||| ||||||| |||||| ||||||||||| ||| |
|
|
| T |
38967237 |
gatgaagaccttgcagaacagataggaaaggatatgtattttgatcttgtagaccatgacaatgtgagcagtttccgtgttcagaagcagacatc-tttc |
38967335 |
T |
|
| Q |
111 |
acgttttcaaggtatcatcatcaattacacttttacaacaggaaaattagagaaaacggaatcttgttaattgatgattgaagtacaagcactactgtga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
38967336 |
acgttttcaaggtatcatcatcaattacactatg-caaatggaaaattaaagaaaacggaatcttgttaattgaggattgaagtacaagcactaatgtga |
38967434 |
T |
|
| Q |
211 |
ttatattgactaagcctaataaatcataatcaagaaaaacaagaatcagatctttcctaata |
272 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||| |
|
|
| T |
38967435 |
ttatattgactaagcctactaaatcataatcaagaaaaaccagaatcagatatgtcctaata |
38967496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 39866483 - 39866256
Alignment:
| Q |
6 |
tacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttccttgttcaaaagcagacatc |
105 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| ||||||||||| |||| |||||| ||| ||||||||||| ||||| |||||||||||||| || |
|
|
| T |
39866483 |
tacgagatgaagaccttgcaaaacaggttggaaagtatatatattttgatctcgtagactatgacaaagtgaggattttccatgttcaaaagcagatgtc |
39866384 |
T |
|
| Q |
106 |
atttaacgttttcaaggtatcatcatcaattacacttttacaacaggaaaattaga-gaaaacggaatcttgttaattgatgattgaagtacaagcacta |
204 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| | |||| | ||||| ||| |||| | ||||||| | |||||| |||||| |||||||||||| |
|
|
| T |
39866383 |
atttaacattttcaaggtatcatcatcagttacagtcttac-gttgtaaaataagaggaaatctgaatcttatcaattgaggattgatgtacaagcacta |
39866285 |
T |
|
| Q |
205 |
ctgtgattatattgactaagcctaataaa |
233 |
Q |
| |
|
||||||||||| || ||||||||||||| |
|
|
| T |
39866284 |
atgtgattatatagaataagcctaataaa |
39866256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 39858868 - 39858663
Alignment:
| Q |
1 |
ggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttccttgttcaaaagcag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| || ||||||||| |||| ||||||| || ||||||||||||||||| |||| |||||||| |
|
|
| T |
39858868 |
ggtggtacgagatgaagaccttgcagaacaaattggaaatgacatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttaaaaagcag |
39858769 |
T |
|
| Q |
101 |
acatcatttaacgttttcaaggtatc--atcatcaattacacttttacaacaggaaaattaga-gaaaacggaatcttgttaattgatgattgaagtaca |
197 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||| ||||||| |||| | ||||||||||| ||||| | |||||||||||||| ||||||| |||| |
|
|
| T |
39858768 |
acgtcatttaacgttttcaaggtatcatatcatcagttacactcttac-attggaaaattagacaaaaaccgtatcttgttaattgaggattgaaataca |
39858670 |
T |
|
| Q |
198 |
agcacta |
204 |
Q |
| |
|
|| |||| |
|
|
| T |
39858669 |
agtacta |
39858663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 37467796 - 37467676
Alignment:
| Q |
11 |
gatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttccttgttcaaaagcagacatcattta |
110 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||||| ||| |||||||||||| |||||| |
|
|
| T |
37467796 |
gatgaagatcttggagaacagattggaaaggatatatattttgatcttgtagaacatgacaaagtgcggagtttccgtgtacaaaagcagacaccattta |
37467697 |
T |
|
| Q |
111 |
acgttttcaaggtatcatcat |
131 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37467696 |
acgttttcaaggtatcatcat |
37467676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 400 - 479
Target Start/End: Complemental strand, 39912310 - 39912231
Alignment:
| Q |
400 |
tgatgattattcaacaggtgtgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagag |
479 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39912310 |
tgatgattattcaacagatgtgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagag |
39912231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39849476 - 39849242
Alignment:
| Q |
1 |
ggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttccttgttcaaaagcag |
100 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| |||||||| ||| |||||||| |||||||||||| || |||||||||||||||| ||||||||||||| |
|
|
| T |
39849476 |
ggtggtacgagatgaggactttgcagaacaaattggaaatgatttatattttgatcttgtagaccttgataaagtgaggagtttccgtgttcaaaagcag |
39849377 |
T |
|
| Q |
101 |
acatcatttaacgttttcaaggtatc--atcatcaattacacttttacaacaggaaaattagagaaa-acggaatcttgttaattgatgattgaagtaca |
197 |
Q |
| |
|
| || |||||||||||||||||||| |||||| |||| || ||||| | ||||| |||||| || |||||| |||||||| ||||||||||| |
|
|
| T |
39849376 |
gcgtcgtttaacgttttcaaggtatcgtatcatcggttactctcttaca--ttggaaatttgagaaagacttaatctttttaattgagaattgaagtaca |
39849279 |
T |
|
| Q |
198 |
agcactactgtgattatattgactaagcctaataaat |
234 |
Q |
| |
|
| | ||| ||||||||||| || | ||||||||||| |
|
|
| T |
39849278 |
aaccctaatgtgattatatagagcacgcctaataaat |
39849242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 39734688 - 39734818
Alignment:
| Q |
1 |
ggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttccttgttcaaaagcag |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| || ||||||||| ||||| | ||||| ||| | |
|
|
| T |
39734688 |
ggtggtacgagatgaagaccttgcacaacagattggaaaggatatatattttgatcttgttgaccctgacaaagtgagcagttttcgtgttcccaagaat |
39734787 |
T |
|
| Q |
101 |
acatcatttaacgttttcaaggtatcatcat |
131 |
Q |
| |
|
|| ||||||| | ||||||||||||||||| |
|
|
| T |
39734788 |
acgacatttaaagatttcaaggtatcatcat |
39734818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 479
Target Start/End: Original strand, 38967894 - 38967973
Alignment:
| Q |
400 |
tgatgattattcaacaggtgtgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagag |
479 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
38967894 |
tgatgattattcaaccgaggtgttatttttgtaagtttgatttctctgtttgattgttaatatgtgttatgtaggaagag |
38967973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 39869191 - 39869112
Alignment:
| Q |
6 |
tacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttc |
85 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||| ||| |||||| |||||||| |
|
|
| T |
39869191 |
tacgagatgaagacctggcagaacagattggaaaggatatatgttttgatctcgtagaccttggaaaagtggggagtttc |
39869112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 479
Target Start/End: Complemental strand, 39865732 - 39865651
Alignment:
| Q |
400 |
tgatgattattcaacaggtgtgttatttttgtaagtttgatttttctgtctgattgcta--atatgtgatatgtaggaagag |
479 |
Q |
| |
|
|||||||| |||||| | ||| ||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
39865732 |
tgatgatttttcaacggatgtattatttttgtatgtttgatttttctgttttattgctaatatatgtgatatgtaggaagag |
39865651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 39899378 - 39899295
Alignment:
| Q |
325 |
aaatattaaaa-catgatgctttagttggaaggagaaaaaag----tcgtcatttgaataatctgtggtttttatgcttttgat |
403 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| |||||||| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
39899378 |
aaatattaaaagcatgatgctttagttgaaagaagaaaaaaagtattcgtcatatgaataatatgtggtttttatgcttttgat |
39899295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 37467156 - 37467079
Alignment:
| Q |
403 |
tgattattcaacaggtgtgttatttttgta-agtttgatttttctgtctgattgctaatatgtgatatgtaggaagag |
479 |
Q |
| |
|
||||||||||| || |||||||||||| |||||| | ||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
37467156 |
tgattattcaatagctgtgttattttttccgagtttggtatttctgtttgattgctaatctgtgatatgtaggaagag |
37467079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 39727640 - 39727680
Alignment:
| Q |
91 |
tcaaaagcagacatcatttaacgttttcaaggtatcatcat |
131 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
39727640 |
tcaaaagcagacgtcatttaatgttttcaaggtatcatcat |
39727680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 476
Target Start/End: Complemental strand, 39848633 - 39848577
Alignment:
| Q |
420 |
tgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaa |
476 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||| | ||||||||||||||||| |
|
|
| T |
39848633 |
tgttatttttgtaagttggatttttacgtttgattgattttatgtgatatgtaggaa |
39848577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 36057888 - 36058012
Alignment:
| Q |
11 |
gatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagaccatggcaaagtgaggagtttccttgttcaaaagcagacatcattta |
110 |
Q |
| |
|
||||||||| ||| || ||||| ||||||||||| || ||| ||||||||||||| | ||||||||| ||||||| ||| |||||||||||| | |||| |
|
|
| T |
36057888 |
gatgaagacattgaagggcagatgggaaaggatatctactttgatcttgtagaccacgacaaagtgagaagtttccgtgtacaaaagcagacacctttta |
36057987 |
T |
|
| Q |
111 |
acgttttcaaggtatcatcatcaat |
135 |
Q |
| |
|
| ||||||||||||||| ||||||| |
|
|
| T |
36057988 |
atgttttcaaggtatcaccatcaat |
36058012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 29624477 - 29624528
Alignment:
| Q |
200 |
cactactgtgattatattgactaagcctaataaatcataatcaagaaaaaca |
251 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||| ||||||||||||||| |
|
|
| T |
29624477 |
cactaatgtgattatataggctaagcctaataaatcttaatcaagaaaaaca |
29624528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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