View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2264_low_1 (Length: 660)
Name: NF2264_low_1
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2264_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 29 - 619
Target Start/End: Original strand, 33695072 - 33695665
Alignment:
| Q |
29 |
aaattattttgttaaaaatattgagaaagagnnnnnnnnn-ttgttaattaaagtgactatgtagtttgaggttacaattctaaactcaaacttgagatt |
127 |
Q |
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| T |
33695072 |
aaattattttgttaaaaatattgagaaagagaaaaaaaaaattgttaattaaagtgactatgtagtttgaggttacaattctaaactcacacttgagatt |
33695171 |
T |
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| Q |
128 |
taactcaatggtgataacttagttttgtaaactcaagaaactttctaatggtgatgtctttgcacattaaaattattatagtgataataaaacctctcaa |
227 |
Q |
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| T |
33695172 |
taactcaatggtgataacttagttttgtaaactcaagaaactttctaatggtgacgtctttgcacattaaaattattatagtgataataaaacctctcaa |
33695271 |
T |
|
| Q |
228 |
tttcgtcattttacgtggagtgttatgtaagagaagttgcctactaattaggtttgatgtacttatcatatgtctttaaattgcttcttgttaaagatgt |
327 |
Q |
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| T |
33695272 |
tttcatcattttacgtggattgttatgtaagagaagttgcctactaattaggtttgatgtacttatcatatgtctttaaattgctacttgttaaagatgt |
33695371 |
T |
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| Q |
328 |
agtacttcgtcagaaatttttacgtatgttgtgggattgccctaagacgataccggtttggcataaactcaaatttgatttacataatgatcctaatgaa |
427 |
Q |
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| T |
33695372 |
agtacttcgtcagaaatttttacgtatgttgtgggattgccctaagacgataccggtttggcataaactcaaatttgatttacataatgatcctaatgaa |
33695471 |
T |
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| Q |
428 |
ggtaaacgtcatttatgattcacaattaatgcatgcaatcggacaacatagtgctatttttctcattggatattggtttatttaaaagtctagaaacgac |
527 |
Q |
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| T |
33695472 |
ggtgaacgtcatttatgattcacaattaatgcatgcaatcggacaacatagtgctatttttctcattggatattgatttatttaaaagtctagaaacgac |
33695571 |
T |
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| Q |
528 |
gaatcnnnnnnng--actggtcagtcaccctctctaatttattcttagtcaaaaagcaatacaagaatgaaattaatttaataattttatttaa |
619 |
Q |
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| T |
33695572 |
gaatctttttttgacactagtcagtcaccctctctaatttattcttagtcaaaaatcaatacaagaatgaaattaatttaataattttatttaa |
33695665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 430
Target Start/End: Original strand, 35297316 - 35297401
Alignment:
| Q |
345 |
ttttacgtatgttgtgggattgccctaagacgataccggtttggcataaactcaaatttgatttacataatgatcctaatgaaggt |
430 |
Q |
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| T |
35297316 |
ttttacatatgttgcgtgattgccctaaggccatgcgggtttggcataaactcatatttaattttcataatgattcaaatgaaggt |
35297401 |
T |
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