View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2264_low_12 (Length: 306)

Name: NF2264_low_12
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2264_low_12
NF2264_low_12
[»] chr3 (2 HSPs)
chr3 (5-271)||(17682304-17682574)
chr3 (5-292)||(19766557-19766825)
[»] chr6 (4 HSPs)
chr6 (40-187)||(15434073-15434219)
chr6 (198-279)||(15434298-15434379)
chr6 (126-195)||(10093072-10093141)
chr6 (126-195)||(33044884-33044953)
[»] chr4 (4 HSPs)
chr4 (26-195)||(22292033-22292201)
chr4 (198-271)||(22292289-22292362)
chr4 (126-181)||(29862802-29862857)
chr4 (194-226)||(7135469-7135501)
[»] scaffold0045 (1 HSPs)
scaffold0045 (126-195)||(11072-11141)
[»] chr8 (3 HSPs)
chr8 (126-195)||(5658370-5658439)
chr8 (126-195)||(14677460-14677529)
chr8 (126-195)||(31100310-31100379)
[»] scaffold0035 (1 HSPs)
scaffold0035 (126-194)||(35676-35744)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 17682574 - 17682304
Alignment:
Q  5 actgagatgaaactgaatcgccaactatgaccttattctcgtcagagacctaaatctgattatgttgtgaacctaattgcaaatttattaacaataatga 104  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| |||||||||    
T  17682574 actgagatgaaactgaatcgtcaactatgaccctattctcgtcagagacccaaatctgactgtgttgtgaacctaattgcaaatttattaccaataatga 17682475  T
Q  105 atggaattgaagaaacaac----tgagaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagagcattg 200  Q
    ||||||||||||||||||     ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  17682474 atggaattgaagaaacaatatattgagaggtggagagtgattaatctcaaaacacaattcaattcatagaaagggaaaaacgattaccttgagagcattg 17682375  T
Q  201 ttgatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctcttt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17682374 ttgatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctcttt 17682304  T

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Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 19766825 - 19766557
Alignment:
Q  5 actgagatgaaactgaatcgccaactatgaccttattctcgtcagagacctaaatctgattatgttgtgaacctaattgcaaatttattaacaataatga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||    
T  19766825 actgagatgaaactgaatcgccaactatgaccttattctcgtcagagacctaaatctgattatgttgtgaacctaa---------------------tga 19766747  T
Q  105 atggaattgaagaaacaactgagaggtggatagtg--attaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagagcattgtt 202  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19766746 atggaattgaagaaacaactgagaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagagcattgtt 19766647  T
Q  203 gatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctctttattcggagtggcatgtttttg 292  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19766646 gatgaatggagagagcaacgacaggagcttccaatcgagattgcaaatttccatggcttctttctctttattcggggtggcatgtttttg 19766557  T

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Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 40 - 187
Target Start/End: Original strand, 15434073 - 15434219
Alignment:
Q  40 ttctcgtcagagacctaaatctgattatgttgtgaacctaattgcaaatttattaacaataatgaatggaattgaagaaacaactgagaggtggatagtg 139  Q
    ||||| ||||||||| |||||||||| ||||||||| |||||||||||||||  || | ||||||||||||||||||||||||||||||||||||  |||    
T  15434073 ttctcatcagagacccaaatctgattctgttgtgaatctaattgcaaatttacaaa-attaatgaatggaattgaagaaacaactgagaggtggagggtg 15434171  T
Q  140 attaaactcaaaacacaattcatttcatagaaagggaaaagcgattac 187  Q
    |||| ||| ||||||||||||| | | |||||||||||||||||||||    
T  15434172 attagactaaaaacacaattcaatacgtagaaagggaaaagcgattac 15434219  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 15434298 - 15434379
Alignment:
Q  198 ttgttgatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctctttattcggag 279  Q
    |||||||||||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||| ||||||||| |||||||    
T  15434298 ttgttgatgaagggagagagcaacgatgggagcccccacttgagattgcaaatttccatggcttatttctcttttttcggag 15434379  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 10093141 - 10093072
Alignment:
Q  126 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 195  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  10093141 agaggtggagagtgattagactcaaaacacaattcaattcatagaaagggaaaagctattaccttgagag 10093072  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 33044884 - 33044953
Alignment:
Q  126 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 195  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||| |||||| ||||||    
T  33044884 agaggtggagagtgattagactcaaaacacaattcaattcatagaaaaggaaaagctattaccttgagag 33044953  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 22292033 - 22292201
Alignment:
Q  26 caactatgaccttattctcgtcagagacctaaatctgattatgttgtgaacctaattgcaaatttattaacaataatgaatggaattgaagaaacaactg 125  Q
    ||||||| ||| | ||||| |||||| || |||| ||||| ||||||||| |||||||||||||||  || | ||||||||| |||||||||||||||||    
T  22292033 caactattaccctgttctcatcagagccccaaatgtgattgtgttgtgaatctaattgcaaatttacaaa-attaatgaatgcaattgaagaaacaactg 22292131  T
Q  126 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 195  Q
    ||||||||| ||| |||| ||| ||||||||||||| | |||||||||||||||||||||||| ||||||    
T  22292132 agaggtggagagtaattagactaaaaacacaattcaatacatagaaagggaaaagcgattaccttgagag 22292201  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 22292289 - 22292362
Alignment:
Q  198 ttgttgatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctcttt 271  Q
    ||||||||||| |||||||||||||| |||||| |||| | ||||||||||||||||||||||| |||||||||    
T  22292289 ttgttgatgaacggagagagcaacgatgggagcctccacttgagattgcaaatttccatggcttatttctcttt 22292362  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 29862802 - 29862857
Alignment:
Q  126 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagc 181  Q
    ||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||    
T  29862802 agaggtggagagtgattagactcataacacaattcaattcatagaaagagaaaagc 29862857  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 7135501 - 7135469
Alignment:
Q  194 agcattgttgatgaagggagagagcaacgacgg 226  Q
    |||||||||||||||||||||||| ||||||||    
T  7135501 agcattgttgatgaagggagagagaaacgacgg 7135469  T

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Target: scaffold0045 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 11072 - 11141
Alignment:
Q  126 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 195  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  11072 agaggtggagagtgattagactcaaaacacaattcaattcatagaaagggaaaagctattaccttgagag 11141  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 5658439 - 5658370
Alignment:
Q  126 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 195  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||    
T  5658439 agaggtggagagtgattagactcaaaacacaattcaattcatagaaagggaaaagctattaccttgagag 5658370  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 14677460 - 14677529
Alignment:
Q  126 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 195  Q
    ||||||||| |||||||  ||||| ||||||||||| ||||||||||||||||||| |||||| ||||||    
T  14677460 agaggtggagagtgattggactcagaacacaattcaattcatagaaagggaaaagctattaccttgagag 14677529  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 31100310 - 31100379
Alignment:
Q  126 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgagag 195  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||| | |||||| |||||| ||||||    
T  31100310 agaggtggagagtgattagactcaaaacacaattcaattcatagaaaagaaaaagctattaccttgagag 31100379  T

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Target: scaffold0035 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 35744 - 35676
Alignment:
Q  126 agaggtggatagtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccctgaga 194  Q
    ||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| |||||| |||||    
T  35744 agaggtggagagtgattagactcagaacacaattcaattcatagaaagggaaaagctattaccttgaga 35676  T

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