View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2264_low_15 (Length: 280)
Name: NF2264_low_15
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2264_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 1985368 - 1985116
Alignment:
| Q |
19 |
aaaccttggcgtggatgatgattgttgatgcatcattcatactcgagttccttcaattttatgccatgcaagaagaatcaagaaaggtaatttcttccaa |
118 |
Q |
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| T |
1985368 |
aaaccttggcgtggatgatgattgttgatgcatcattcctacttgagttccttcaattttatgccatgcaagaagaatcaagaaaggtaatttcttccaa |
1985269 |
T |
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| Q |
119 |
catgtctcattttgtgaactatgttgggaggagattatctcctaatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttg |
218 |
Q |
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| T |
1985268 |
catgtctcattttgtgaactatgttgggaggagattatctcctaatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttg |
1985169 |
T |
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| Q |
219 |
agaaagatgcttgagttaaaattcttttcatcagaagaaaatgctgatgatgt |
271 |
Q |
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| T |
1985168 |
agaaagatgcttgagttaaaattcttttcatcagaagaaaatgctgatgatgt |
1985116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 1947964 - 1948180
Alignment:
| Q |
30 |
tggatgatgattgttgatgcatcattcatactcgagttccttcaattttatgccatgcaagaagaatcaagaaa---ggtaatttcttccaacatgtctc |
126 |
Q |
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| T |
1947964 |
tggatgatgatcgttgatgcatcattcttacttgagttacttcaaatttatgcaatgcaagaaggtgcaacaaaaagggtagtttcatctagcatgtcac |
1948063 |
T |
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| Q |
127 |
attttgtgaactatgttgggaggagattatctcctaatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagat |
226 |
Q |
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| T |
1948064 |
atttagttgactatgctggtagaaaatcagctcataatgcgatgttgagagacattgttatgctcgagaatcaaattccgttatttgttttgagaaaatt |
1948163 |
T |
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| Q |
227 |
gcttgagttaaaattct |
243 |
Q |
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| T |
1948164 |
gcttgagttcaaattct |
1948180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 1978442 - 1978234
Alignment:
| Q |
30 |
tggatgatgattgttgatgcatcattcatactcgagttccttcaattttatgccatgcaagaa---gaatcaagaaaggtaatttcttccaacatgtctc |
126 |
Q |
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| T |
1978442 |
tggatgatgatcgttgatgcatcattcttactcgagttacttcaaatttatgcaatgcaagaaggtgaaccaaagagggaagttttgtcaagcatgtcac |
1978343 |
T |
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| Q |
127 |
attttgtgaactatgttgggaggagattatctcctaatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagat |
226 |
Q |
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| T |
1978342 |
atttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaatcaaattccattaatggttttgagaaaatt |
1978243 |
T |
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| Q |
227 |
gcttgagtt |
235 |
Q |
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| T |
1978242 |
gcttgagtt |
1978234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 5625128 - 5625226
Alignment:
| Q |
144 |
gggaggagattatctcctaatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattc |
242 |
Q |
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||||||| |||| || ||||||||| |||| || || || |||||||| |||||||| || |||||| |||||||||||||| | ||||| |||||| |
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| T |
5625128 |
gggaggaaattaggtcataatgcaatcttgaaagacatagtaatgcttgaaaatcaaatccctttatttattttgagaaagatgttggagtttaaattc |
5625226 |
T |
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