View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2264_low_20 (Length: 240)
Name: NF2264_low_20
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2264_low_20 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 28270561 - 28270774
Alignment:
| Q |
17 |
agtttgttagcttattgaagaaagcattgaagactgagatatggtcaatgctacatgataaaactaaagaaagctagaagcacttttgaagtaaatttct |
116 |
Q |
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| T |
28270561 |
agtttgttagcttattgaagaaagcattaaagactgagatatggtcaatgctacatgataaaactaaagaaagctagaagcacttttgaagtaaatttct |
28270660 |
T |
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| Q |
117 |
actactttctgtaatgcaaccaaagtaaggtgtactattctttagctcaggctcaggctaacctggtaaggcaataaaagcatctgaatgcttagccatc |
216 |
Q |
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| T |
28270661 |
actactttctgtaatgcaaccaaagtaaggtgtactattctttagctcaggctcagactaacctggtaaggcaataaaagcatctgaatgcttagccatc |
28270760 |
T |
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| Q |
217 |
tctgccttcctttg |
230 |
Q |
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|||||||||||||| |
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| T |
28270761 |
tctgccttcctttg |
28270774 |
T |
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Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 77804 - 77747
Alignment:
| Q |
173 |
gctaacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttcctttg |
230 |
Q |
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| T |
77804 |
gctaacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttg |
77747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 40888480 - 40888537
Alignment:
| Q |
173 |
gctaacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttcctttg |
230 |
Q |
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| T |
40888480 |
gctaacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttg |
40888537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 21626729 - 21626687
Alignment:
| Q |
176 |
aacctggtaaggcaataaaagcatctgaatgcttagccatctc |
218 |
Q |
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| T |
21626729 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctc |
21626687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 14904791 - 14904735
Alignment:
| Q |
173 |
gctaacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttccttt |
229 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||| |||| || ||||||| |
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| T |
14904791 |
gctaacctggtaaggcaataaaagcatcggaatgcctagccgtctcagcattccttt |
14904735 |
T |
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