View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2264_low_5 (Length: 459)
Name: NF2264_low_5
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2264_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 19231514 - 19231956
Alignment:
| Q |
18 |
tgaaccacaatgctttttcctcacttttatataaaaatctcacaaaccaccaactcatattccctctcacacccaaaactccactacccaaaaatcaaca |
117 |
Q |
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| T |
19231514 |
tgaaccacaaagctttttccccacttttatataaa--tctcaaaaaccaccaactcatattccctctcacacccgaaactccattacccaaaaatcaaca |
19231611 |
T |
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| Q |
118 |
ca--gcnnnnnnn-ctcttacaatggctgccacacaaaaagaacaccaagaagaaacacacattgaaatcgatgttttagaagccatattctccctagtg |
214 |
Q |
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| T |
19231612 |
caaagcttttttttctcttacaatggctgccacacaaaaagaacaccaagaagaaacacacattgaaatcgatgttttagaagctatattctccctcatg |
19231711 |
T |
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| Q |
215 |
ccactaatcgaacttgttcctgcttgtcatgtctcaaaggtttggaaccatgctgttttttcctcactcgcacacctcaaacaaatcaaaccatggctca |
314 |
Q |
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| T |
19231712 |
ccactcatcgaacttgttcctgcttgtcatgtctcaaaggtttggaaccatgctgttttctcctcactcgcacacctcaaacaaatcaaaccatggctca |
19231811 |
T |
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| Q |
315 |
taattctcacgcaaaccacacgcgcttcgcgtgtggttactgaacacgcttacgaccctcgctctcatgcatggcttcagattaagcaccaaccgttgat |
414 |
Q |
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| T |
19231812 |
taattctcacgcaaaccacacgcgcttcgcgagtggttaccgaacacgcttacgaccctcgctctcatgcatggcttcagattaagcaccaaccgttgat |
19231911 |
T |
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| Q |
415 |
caccaaagctagtgaattccctaccgttagttcatctcactcgac |
459 |
Q |
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| T |
19231912 |
caccaaagctagtgaattccctaccgttagatcatctcattcgac |
19231956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 14630143 - 14630081
Alignment:
| Q |
362 |
gcttacgaccctcgctctcatgcatggcttcagat---taagcaccaaccgttgatcaccaaa |
421 |
Q |
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| T |
14630143 |
gcttatgatcctcgctctcatgcgtggcttcagataactaaacaccaaccgttgatcaacaaa |
14630081 |
T |
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