View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2265_low_1 (Length: 416)
Name: NF2265_low_1
Description: NF2265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2265_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 100 - 406
Target Start/End: Complemental strand, 8597467 - 8597161
Alignment:
| Q |
100 |
tgcccctggttgcattttgcagaaggttatcttgctcatggtaatgtccacatttaaataactagaattcaaattttgaaagaggctttagcattgatcg |
199 |
Q |
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| T |
8597467 |
tgcctctgattgcattttgcagaatgttatcttgctcatggtaatgtccacatttaaataactagtgtccacattttgaaagaggctttggcattgattg |
8597368 |
T |
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| Q |
200 |
catacataattgagattctcaattgtatgctaaggtaattcacaattttgattaataaaaactatgagcataagttatgcgaaattacaagcagtacaat |
299 |
Q |
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| T |
8597367 |
cagacatcaataggattatcaattgtatgttaaggtaactcactgttttgattaatagaaactatgagcataagttatgcgaaattacaagctgtacaat |
8597268 |
T |
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| Q |
300 |
agaattctgcaatatagcagacatcaacaattccatgaaaccaacctaagcataatacactatcccaatatatcttgataacatctgaactgatttcact |
399 |
Q |
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| T |
8597267 |
aggattctgcaatacagcagacctcaacaataccatgaaaccaacctaagcataatacactatctcaatatatcttgataacatctaaattgatttcacc |
8597168 |
T |
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| Q |
400 |
agtataa |
406 |
Q |
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| T |
8597167 |
agtataa |
8597161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 8597588 - 8597498
Alignment:
| Q |
18 |
agtgactaaatcaaaagtaattcaacattgactaattcaagagaagtgactaaattaaaagtaattcaaaagtgactaaaagtgcccctgg |
108 |
Q |
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| T |
8597588 |
agtgactaaatcaaaagtaattcaaaagtgactaattcaagagaagtgactaaattaaaattaattcaaaagtgactaaaagtgcctctgg |
8597498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 8597589 - 8597554
Alignment:
| Q |
61 |
aagtgactaaattaaaagtaattcaaaagtgactaa |
96 |
Q |
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| T |
8597589 |
aagtgactaaatcaaaagtaattcaaaagtgactaa |
8597554 |
T |
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