View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2265_low_3 (Length: 249)

Name: NF2265_low_3
Description: NF2265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2265_low_3
NF2265_low_3
[»] chr8 (10 HSPs)
chr8 (1-238)||(4506551-4506787)
chr8 (43-170)||(15076678-15076805)
chr8 (43-170)||(15171705-15171835)
chr8 (43-169)||(15168870-15168996)
chr8 (64-169)||(13033410-13033515)
chr8 (64-169)||(15214600-15214705)
chr8 (48-172)||(15000155-15000279)
chr8 (64-112)||(15052593-15052641)
chr8 (64-112)||(15066792-15066840)
chr8 (68-105)||(14348072-14348109)
[»] chr7 (2 HSPs)
chr7 (42-170)||(1618202-1618330)
chr7 (42-172)||(1626767-1626897)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4506551 - 4506787
Alignment:
Q  1 aaagattgatttgaccttagtttattagcacaaaaccaagcagacacaaaagtgtcaaaatgatttctacatatataaattattttacaattggactctt 100  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4506551 aaagattgatttgaccttattttattagcataaaaccaagcagacacaaaagtgtcaaaaggatttctacatatataaattattttacaattggactctt 4506650  T
Q  101 taattgacttggctagtgaaaagaatggagcatgagtcccaaaaagccttggttcattcatgtttgataggttgatttgaaaactttggctatcactacc 200  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  4506651 taattgacttggctagtgaaaagaatggaacatgagt-ccaaaaagccttggttcattcatgtttgataggttaatttgaaaactctggctatcactacc 4506749  T
Q  201 accataaacattgtattcaaagaaaggcactagttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4506750 accataaacattgtattcaaagaaaggcactagttcat 4506787  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 15076805 - 15076678
Alignment:
Q  43 gacacaaaagtgtcaaaatgatttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaatggagcatgagtcccaa 142  Q
    ||||||||||| |||||  ||||||||| |||||||| ||| ||||||||||| |||| |||||||||||| ||||||   ||||||   ||||||||||    
T  15076805 gacacaaaagtatcaaatggatttctacttatataaactatcttacaattggagtcttgaattgacttggcaagtgaaggaaatggaatgtgagtcccaa 15076706  T
Q  143 aaagccttggttcattcatgtttgatag 170  Q
    |||||||||||||| | || ||||||||    
T  15076705 aaagccttggttcaattatttttgatag 15076678  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 15171705 - 15171835
Alignment:
Q  43 gacacaaaagtgtcaaaatgatttctacatatataaattatt---ttacaattggactctttaattgacttggctagtgaaaagaatggagcatgagtcc 139  Q
    ||||||||||| |||||  ||||||||| |||||||| || |   |||||||||||||||| |||||||||||| ||||||   ||||||   |||||||    
T  15171705 gacacaaaagtatcaaatggatttctacttatataaactactatcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatgtgagtcc 15171804  T
Q  140 caaaaagccttggttcattcatgtttgatag 170  Q
    ||||||||||||||||| | || ||||||||    
T  15171805 caaaaagccttggttcaattatttttgatag 15171835  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 15168870 - 15168996
Alignment:
Q  43 gacacaaaagtgtcaaaatgatttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaatggagcatgagtcccaa 142  Q
    ||||||||||| |||||  ||||||||| |||||||| ||| |||||||| ||||||| ||| |||||||| |||||| | ||||||   ||||||||||    
T  15168870 gacacaaaagtatcaaatggatttctacttatataaactatcttacaattagactcttgaatcgacttggcaagtgaagaaaatggaatgtgagtcccaa 15168969  T
Q  143 aaagccttggttcattcatgtttgata 169  Q
    | | |||||||||| | || |||||||    
T  15168970 atatccttggttcaattatttttgata 15168996  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 13033515 - 13033410
Alignment:
Q  64 tttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaatggagcatgagtcccaaaaagccttggttcattcatgt 163  Q
    ||||||||||||||||| ||||||||| ||||||||||||  |||||||  |  |||| |||||||   ||||| |||||||||||||||||| |||| |    
T  13033515 tttctacatatataaatgattttacaactggactctttaaccgacttgggcaacgaaaggaatggaatgtgagtgccaaaaagccttggttcaatcatat 13033416  T
Q  164 ttgata 169  Q
    ||||||    
T  13033415 ttgata 13033410  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 15214600 - 15214705
Alignment:
Q  64 tttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaatggagcatgagtcccaaaaagccttggttcattcatgt 163  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  |  |||   |||||    ||||| |||||||||||||||||| |||| |    
T  15214600 tttctacatatataaattattttacaattggactctttaactgacttgggcaacgaaggaaatggcatgtgagttccaaaaagccttggttcagtcatat 15214699  T
Q  164 ttgata 169  Q
    ||||||    
T  15214700 ttgata 15214705  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 15000279 - 15000155
Alignment:
Q  48 aaaagtgtcaaaatgatttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaatggagcatgagtcccaaaaagc 147  Q
    |||||||||||   |||| |||||||||||||| || ||||||||||| || |||||||||||||| |  |||   ||||||  |||||| ||||||||     
T  15000279 aaaagtgtcaagtggattcctacatatataaatgatcttacaattggattccttaattgacttggccaaggaattaaatggaatatgagttccaaaaagt 15000180  T
Q  148 cttggttcattcatgtttgataggt 172  Q
    |||||||||  ||||||||||||||    
T  15000179 cttggttcagccatgtttgataggt 15000155  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 15052641 - 15052593
Alignment:
Q  64 tttctacatatataaattattttacaattggactctttaattgacttgg 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15052641 tttctacatatataaattattttacaattggactctttaactgacttgg 15052593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 15066840 - 15066792
Alignment:
Q  64 tttctacatatataaattattttacaattggactctttaattgacttgg 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15066840 tttctacatatataaattattttacaattggactcttgaattgacttgg 15066792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 14348072 - 14348109
Alignment:
Q  68 tacatatataaattattttacaattggactctttaatt 105  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  14348072 tacatatgtaaattatcttacaattggactctttaatt 14348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 1618202 - 1618330
Alignment:
Q  42 agacacaaaagtgtcaaaatgatttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaatggagcatgagtccca 141  Q
    ||||||||||||||||||  | ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||   || |||  |||||| |||    
T  1618202 agacacaaaagtgtcaaatgggtttctacatatgtaaattatcttacaattggattctttaattgacttggctagagaagtaaaaggaatatgagttcca 1618301  T
Q  142 aaaagccttggttcattcatgtttgatag 170  Q
    ||||||||||||||| |||||||| ||||    
T  1618302 aaaagccttggttcaatcatgtttaatag 1618330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 1626767 - 1626897
Alignment:
Q  42 agacacaaaagtgtcaaaatgatttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaatggagcatgagtccca 141  Q
    ||||||||||||||||||  | || |||||||| |||||||| |||||||||||||||||||| ||||||||||| |||  ||| |||   ||||| |||    
T  1626767 agacacaaaagtgtcaaatgggttcctacatatgtaaattatcttacaattggactctttaatagacttggctagagaatggaaaggaatgtgagttcca 1626866  T
Q  142 aaaagccttggttcattcatgtttgataggt 172  Q
    |||| |||||||||| |||||||| ||||||    
T  1626867 aaaatccttggttcaatcatgtttaataggt 1626897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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