View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2267_low_2 (Length: 362)

Name: NF2267_low_2
Description: NF2267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2267_low_2
NF2267_low_2
[»] chr4 (32 HSPs)
chr4 (20-361)||(7823101-7823441)
chr4 (20-361)||(7813609-7813949)
chr4 (20-361)||(7800769-7801109)
chr4 (251-319)||(7908665-7908733)
chr4 (251-319)||(7790443-7790511)
chr4 (251-327)||(7878746-7878822)
chr4 (251-318)||(7773456-7773523)
chr4 (253-319)||(7771760-7771826)
chr4 (251-327)||(49043790-49043866)
chr4 (251-321)||(48864398-48864468)
chr4 (22-74)||(7771538-7771590)
chr4 (22-74)||(7790223-7790275)
chr4 (241-319)||(48156059-48156137)
chr4 (251-313)||(48853044-48853106)
chr4 (251-309)||(49038518-49038576)
chr4 (23-80)||(7773691-7773748)
chr4 (251-304)||(48147358-48147411)
chr4 (251-310)||(7786827-7786886)
chr4 (251-310)||(45371713-45371772)
chr4 (253-306)||(7237386-7237439)
chr4 (251-319)||(45384522-45384590)
chr4 (251-319)||(48870923-48870991)
chr4 (251-319)||(48876227-48876295)
chr4 (251-319)||(48886609-48886677)
chr4 (251-299)||(48903318-48903366)
chr4 (251-327)||(49048177-49048253)
chr4 (255-307)||(50666682-50666734)
chr4 (251-310)||(7766005-7766064)
chr4 (33-99)||(7237584-7237650)
chr4 (258-307)||(37826632-37826681)
chr4 (254-319)||(48863631-48863696)
chr4 (47-119)||(7765804-7765876)
[»] chr5 (3 HSPs)
chr5 (251-307)||(9120126-9120182)
chr5 (254-310)||(42561972-42562028)
chr5 (251-292)||(179421-179462)
[»] chr3 (4 HSPs)
chr3 (251-325)||(11024127-11024201)
chr3 (251-319)||(11015121-11015189)
chr3 (241-306)||(11005571-11005636)
chr3 (251-319)||(47451530-47451598)
[»] chr1 (4 HSPs)
chr1 (254-309)||(24367531-24367586)
chr1 (254-307)||(24310582-24310635)
chr1 (254-309)||(24416144-24416199)
chr1 (257-310)||(24323139-24323192)
[»] chr7 (1 HSPs)
chr7 (251-310)||(48884187-48884246)
[»] chr6 (2 HSPs)
chr6 (252-310)||(21979267-21979325)
chr6 (251-304)||(21016184-21016237)
[»] chr8 (1 HSPs)
chr8 (93-130)||(4962336-4962373)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 7823101 - 7823441
Alignment:
Q  20 gatccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaa 119  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7823101 gatccttctcatagaaaagggtttctatttaatggctctattcattggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaa 7823200  T
Q  120 ttaaaaggaaactgattgaaacacctattcaaaatgattttggcggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7823201 ttaaaaggaaactgattgaaacacctattcaaaatgattttggcggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcat 7823300  T
Q  220 atggattctaacttctgatggtgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7823301 atggattctaacttctgatggtgaaagaatggaaatatgggtgtttaaagattacaaagtgcatttgtcttggaataaaactcttgttctttctgttgat 7823400  T
Q  320 ttcattccagataacttgaatgtttcccctatgctactccac 361  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  7823401 ttcattccagataacttgaatgtttcccctatg-tactccac 7823441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 7813609 - 7813949
Alignment:
Q  20 gatccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaa 119  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||   |||||| | ||||||||||||||||||||||||||||    
T  7813609 gatccttctcatagaaaagggtttctatttaatgaggctattcattggctggcttggagttgtgatttaaatttggatgttattattgtctttgatttaa 7813708  T
Q  120 ttaaaaggaaactgattgaaacacctattcaaaatgattttggcggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcat 219  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7813709 ttaaaaggaaactgattgaaatacctcttcaaaatgatttcggcggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcat 7813808  T
Q  220 atggattctaacttctgatggtgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7813809 atggattctaacttctgatggtgaaagaattgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 7813908  T
Q  320 ttcattccagataacttgaatgtttcccctatgctactccac 361  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  7813909 ttcattccagataacttgaatgtttcccctatg-tactccac 7813949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 7800769 - 7801109
Alignment:
Q  20 gatccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaa 119  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||  |||||||| ||| ||||||||||||| ||||||||||    
T  7800769 gatccttctcatataaaagggttgctatttaatggggctattcattggctggcttggagtcgtgatttagatttgaatgttattattgtgtttgatttaa 7800868  T
Q  120 ttaaaaggaaactgattgaaacacctattcaaaatgattttggcggactgactttagatgctgattctggtttgtgggtatttggcgaaactctgagcat 219  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7800869 ttaaaaggaaactgattgaaatacctcttcaaaatgattttggcggacttactttagatgctgattctggtttgtgggtattttgcgaaactctgagcat 7800968  T
Q  220 atggattctaacttctgatggtgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7800969 atggattctaacttctgatggtgaaagaattgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 7801068  T
Q  320 ttcattccagataacttgaatgtttcccctatgctactccac 361  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  7801069 ttcattccagataacttgaacgtttcccctatg-tactccac 7801109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 7908665 - 7908733
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  7908665 gaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgat 7908733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 7790443 - 7790511
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  7790443 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgat 7790511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 7878746 - 7878822
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattcc 327  Q
    |||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||| |||||||    
T  7878746 gaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctttcggttgatgtcattcc 7878822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 7773523 - 7773456
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttga 318  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||    
T  7773523 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctttctgttga 7773456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 7771760 - 7771826
Alignment:
Q  253 aatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    |||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttctgttgat 7771826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 49043866 - 49043790
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattcc 327  Q
    |||||||||||| ||||||| ||||||||||||||||| |||| ||| ||||||||| ||||| ||||| |||||||    
T  49043866 gaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcc 49043790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 48864398 - 48864468
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgattt 321  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||| | |||||||||| || |||||||    
T  48864398 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgattt 48864468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 7771538 - 7771590
Alignment:
Q  22 tccttctcatagaaaagggtttctatttaatggagctattcattggctggctt 74  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  7771538 tccttctcagagaaaagggtttctatttaatggggctattcattggttggctt 7771590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 7790223 - 7790275
Alignment:
Q  22 tccttctcatagaaaagggtttctatttaatggagctattcattggctggctt 74  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  7790223 tccttctcagagaaaagggtttctatttaatggggctattcattggttggctt 7790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 48156137 - 48156059
Alignment:
Q  241 tgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    ||||||| | |||||||||||| |||| || |||||||||||||| ||||||| |||||||||||| ||| || |||||    
T  48156137 tgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttcctattgat 48156059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 48853044 - 48853106
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttct 313  Q
    |||||||||||  ||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  48853044 gaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 48853106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 49038576 - 49038518
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 309  Q
    |||||||||||| ||||||| |||||||| ||||||||||||| ||| |||||||||||    
T  49038576 gaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 7773748 - 7773691
Alignment:
Q  23 ccttctcatagaaaagggtttctatttaatggagctattcattggctggcttggcgtc 80  Q
    |||||||  ||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  7773748 ccttctcgcagaaaagggtttctatttaatggggctattcattggttggctttgcgtc 7773691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 48147411 - 48147358
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactctt 304  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||    
T  48147411 gaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 7786827 - 7786886
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 310  Q
    |||||||||||| ||||||| ||||| |||||||  ||||||||||| ||||||||||||    
T  7786827 gaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttctt 7786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 45371772 - 45371713
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 310  Q
    |||||||||||  ||||||| |||||||||||||||||||||| ||| ||| ||||||||    
T  45371772 gaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttctt 45371713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 7237439 - 7237386
Alignment:
Q  253 aatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgt 306  Q
    |||||||||| ||||||| |||||| ||||||||| ||||| ||||||||||||    
T  7237439 aatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 45384590 - 45384522
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    |||||||||||| ||||||| || |||||||||||||||||||  || |||| ||||||| || |||||    
T  45384590 gaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttccttttgat 45384522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 48870923 - 48870991
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    ||||| |||||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||||    
T  48870923 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgat 48870991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 48876227 - 48876295
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    ||||| |||||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||||    
T  48876227 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgat 48876295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 48886609 - 48886677
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    ||||| |||||| |||| || ||||||||| | ||||||||||  || |||||||||||||||||||||    
T  48886609 gaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgat 48886677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 48903318 - 48903366
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaa 299  Q
    |||||||||||| ||||||| ||||||||||||| |||||||| |||||    
T  48903318 gaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaa 48903366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 49048253 - 49048177
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcattcc 327  Q
    |||||||||||| ||||||| || |||||||||||||| |||| ||| ||| ||||| |||||  |||| |||||||    
T  49048253 gaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcattcc 49048177  T

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Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 50666682 - 50666734
Alignment:
Q  255 tatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 307  Q
    |||||||| || |||| |||||||||||||| ||||||| |||||||||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 7766005 - 7766064
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 310  Q
    |||||||||||| ||||||| ||||||||| ||||||| |||| ||| || |||||||||    
T  7766005 gaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 7766064  T

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Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 7237650 - 7237584
Alignment:
Q  33 gaaaagggtttctatttaatggagctattcattggctggcttggcgtcaagatttagaattggatgt 99  Q
    |||||||||||||||||||||| | |||||||||||| ||||  || |  |||||||| ||||||||    
T  7237650 gaaaagggtttctatttaatggggttattcattggcttgcttatcgccgtgatttagatttggatgt 7237584  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  258 gggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 307  Q
    ||||| ||||||| |||||| ||||||||||||||| ||| |||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 48863631 - 48863696
Alignment:
Q  254 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    ||||||||| || |||| |||  ||||||||| ||||||| |||||||||||| |||||| |||||    
T  48863631 atatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttgtgctttctattgat 48863696  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 7765804 - 7765876
Alignment:
Q  47 tttaatggagctattcattggctggcttggcgtcaagatttagaattggatgttattattgtctttgatttaa 119  Q
    |||||||| |||||||||||| || ||| |||||| ||| |||  |||||||| ||| ||| |||||||||||    
T  7765804 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaa 7765876  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 9120126 - 9120182
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 307  Q
    |||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||    
T  9120126 gaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgtt 9120182  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 42562028 - 42561972
Alignment:
Q  254 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 310  Q
    ||||||||| ||||||| |||||||||||||| ||||||| ||| | ||||||||||    
T  42562028 atatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttctt 42561972  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 179421 - 179462
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttgg 292  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  179421 gaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 11024201 - 11024127
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgatttcatt 325  Q
    |||||||||||  ||||||| |||||||||||||||||||||| ||| |||||||| || ||| |||||| ||||    
T  11024201 gaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgtcctatctattgattacatt 11024127  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 11015189 - 11015121
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    |||||||||||  ||||||| |||||||||||||||||||||  |||||||||||| || ||| |||||    
T  11015189 gaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgat 11015121  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 11005636 - 11005571
Alignment:
Q  241 tgaaagaatggaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgt 306  Q
    ||||| ||| |||||||||||  ||||||| |||||||||||||||||||||| |||  |||||||    
T  11005636 tgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgt 11005571  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 47451598 - 47451530
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttgat 319  Q
    |||||||||||| ||||||| ||||||||  ||||||||||| | || |||||||||||| || |||||    
T  47451598 gaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgat 47451530  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 24367531 - 24367586
Alignment:
Q  254 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 309  Q
    ||||||||  || |||| |||||||||||||||||||||| |||||||||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgttct 24367586  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 24310582 - 24310635
Alignment:
Q  254 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 307  Q
    ||||||||| ||||||| ||||||||||| || ||||||| |||||||||||||    
T  24310582 atatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgtt 24310635  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 24416144 - 24416199
Alignment:
Q  254 atatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 309  Q
    ||||||||| ||||||| ||||||| ||| || ||||||| |||||||||||||||    
T  24416144 atatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 24323139 - 24323192
Alignment:
Q  257 tgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 310  Q
    |||||| ||||||| ||||||||||| || |||| || ||||||||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttctt 24323192  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 48884187 - 48884246
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 310  Q
    ||||||| |||| ||||||| ||||||||||||  |||||||| ||| ||||||||||||    
T  48884187 gaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttctt 48884246  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 21979325 - 21979267
Alignment:
Q  252 aaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 310  Q
    ||||||||||| ||||||| |||||||||| ||| ||||||||||| |  |||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttctt 21979267  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 21016184 - 21016237
Alignment:
Q  251 gaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactctt 304  Q
    |||||||||||  ||||||| |||||||| ||||||||||||| ||| ||||||    
T  21016184 gaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 4962373 - 4962336
Alignment:
Q  93 tggatgttattattgtctttgatttaattaaaaggaaa 130  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  4962373 tggatgttattattgtctttgatttaatggaaaggaaa 4962336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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