View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2267_low_5 (Length: 268)
Name: NF2267_low_5
Description: NF2267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2267_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 39524601 - 39524353
Alignment:
| Q |
1 |
aagtaatgctctccaaattatgatatcatcaacaaaaaataaaactaacattccaataactattaagtccannnnnnnnnnnnnnggaattgacaatttc |
100 |
Q |
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| T |
39524601 |
aagtaatgctttccaaattatgatatcatcaacaaaaaataaaactaacattctaataactattaagtccatttttttattttt-ggaattgacaatttc |
39524503 |
T |
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| Q |
101 |
attgtgcattgcagtttggtgtagaagaactgatgaactagtagatggcccaaattcttcacacattacaccagcagccttggacagatgggagcaacgg |
200 |
Q |
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| T |
39524502 |
attgtgcattgcagtttggtgtagaagaactgatgaactagtagatggcccaaattcttcacacattacaccagcagccttggacagatgggagcaacgg |
39524403 |
T |
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| Q |
201 |
ttaactgatgtttttgaatgtcgaccatatgatatgtttgatgctgctct |
250 |
Q |
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| T |
39524402 |
ttaactgatgtttttgaatgtcgaccatatgatatgtttgatgctgctct |
39524353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 17381565 - 17381430
Alignment:
| Q |
112 |
cagtttggtgtagaagaactgatgaactagtagatggcccaaattcttcacacattacaccagcagccttggacagatgggagcaacggttaactgatgt |
211 |
Q |
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| T |
17381565 |
cagtgtggtgcagaagaacagatgagttagtggatggtcctaatgcttcacacatcacaccaaaggctttggacagatgggaacaaagattaactgatgt |
17381466 |
T |
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| Q |
212 |
ttttgaatgtcgaccatatgatatgtttgatgctgc |
247 |
Q |
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| T |
17381465 |
ttttgaaggacgtccttatgatatgtatgatgctgc |
17381430 |
T |
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