View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2267_low_6 (Length: 254)
Name: NF2267_low_6
Description: NF2267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2267_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 31236605 - 31236821
Alignment:
| Q |
10 |
aagaatataggatatagggcctaaagttaaaaatgttgttgaaaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaata |
109 |
Q |
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| T |
31236605 |
aagaaaataggatatagagcctaaagttaaaaatgttgttgaaaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaata |
31236704 |
T |
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| Q |
110 |
taacactattcggtgattgtgaccattgacttttaatattatgggatacaatcgtaatttgaacaaattacattcttatagattcattcaatacttcatt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31236705 |
taacactattcggtgattgtgaccattgacttttaatattatgggatacaatcgtaatttgaacaaattacattcttatagattcattcaacacttcatt |
31236804 |
T |
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| Q |
210 |
ttatcgatatatatata |
226 |
Q |
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||||||||||||||||| |
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| T |
31236805 |
ttatcgatatatatata |
31236821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 31245997 - 31246200
Alignment:
| Q |
10 |
aagaatataggatatagggcctaaagttaaaaatgttgttgaaaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaata |
109 |
Q |
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||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31245997 |
aagaaaataggatatagggtctaaaattaaaaatgttgttgaaa-tgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaata |
31246095 |
T |
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| Q |
110 |
taacactattcggtgattgtgaccattgac-ttttaatattatgggatacaatcgtaatttgaacaaattacattcttatagattcattcaatacttcat |
208 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||| |
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| T |
31246096 |
taacactatttggtgattgtgaccattgactttttaatattatgggatacaatcgttatttaaacaaattacattctcatagattcattcaacacttcat |
31246195 |
T |
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| Q |
209 |
tttat |
213 |
Q |
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||||| |
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| T |
31246196 |
tttat |
31246200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 31255151 - 31255270
Alignment:
| Q |
10 |
aagaatataggatatagggcctaaagttaaaaatgttgttgaaaatgatgtgcttattatatgatgtaatgtaactacttggcatttaaattttcaaata |
109 |
Q |
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||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||| ||||||||| | |||||||||||| |
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| T |
31255151 |
aagaaaataggatatagggtctaaaattaaaaatgttgttgaaaatgatgtgctt-----------ttgtgtaacgacttggcatattaattttcaaata |
31255239 |
T |
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| Q |
110 |
taacactattcggtgattgtgaccattgact |
140 |
Q |
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| ||||| || |||||||||||||||||||| |
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| T |
31255240 |
ttacactgtttggtgattgtgaccattgact |
31255270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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