View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2267_low_9 (Length: 238)

Name: NF2267_low_9
Description: NF2267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2267_low_9
NF2267_low_9
[»] chr6 (5 HSPs)
chr6 (1-223)||(31236920-31237142)
chr6 (1-213)||(31246296-31246508)
chr6 (82-152)||(13229262-13229332)
chr6 (52-126)||(12174301-12174371)
chr6 (74-126)||(10668974-10669026)
[»] chr5 (3 HSPs)
chr5 (1-57)||(3193481-3193538)
chr5 (1-56)||(39542522-39542578)
chr5 (77-126)||(39542391-39542440)
[»] chr4 (2 HSPs)
chr4 (6-57)||(2113952-2114004)
chr4 (77-126)||(29118452-29118501)
[»] chr7 (2 HSPs)
chr7 (1-57)||(33480450-33480507)
chr7 (1-57)||(49164736-49164793)
[»] chr2 (1 HSPs)
chr2 (11-55)||(40705890-40705935)
[»] scaffold0777 (1 HSPs)
scaffold0777 (1-55)||(5960-6015)
[»] scaffold0527 (2 HSPs)
scaffold0527 (1-57)||(1758-1815)
scaffold0527 (1-57)||(9821-9878)
[»] chr8 (3 HSPs)
chr8 (52-122)||(28376642-28376708)
chr8 (74-126)||(4350767-4350819)
chr8 (74-126)||(13580454-13580506)
[»] chr1 (1 HSPs)
chr1 (9-57)||(3265433-3265482)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31236920 - 31237142
Alignment:
Q  1 aattgtgtcattttaattatttgatgtctttcttcttgcattttttattgcaaaagaaatatacctatatagttaatactaactactacgtagaaacaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31236920 aattgtgtcattttaattatttgatgtctttcttcttgcattttttattgcaaaagaaatatacctatatagttaatactaactactacgtataaacaat 31237019  T
Q  101 aattttggtgcctctataaaaatggtacattgggttgccacccctcttgcccataggccaaccctcctctcttttatctcgttttctcttaaagtatata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31237020 aattttggtgcctctataaaaatggtacattgggttgccacccctcttgcccataggccaaccctcctctcttttatctcgttttctcttaaagtatata 31237119  T
Q  201 caccaaacctttttctatacaat 223  Q
    |||||||||||||||||||||||    
T  31237120 caccaaacctttttctatacaat 31237142  T

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Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 31246296 - 31246508
Alignment:
Q  1 aattgtgtcattttaattatttgatgtctttcttcttgcattttttattgcaaaagaaatatacctatatagttaatactaactactacgtagaaacaat 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31246296 aattgtgtcattttaattatttgatgtctttattcttgcattttttattgcaaaagaaatatacctatatagttagtactaactactacgtagaaacaat 31246395  T
Q  101 aattttggtgcctctataaaaatggtacattgggttgccacccctcttgcccataggccaaccctcctctcttttatctcgttttctcttaaagtatata 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31246396 aattttggtgcctctataaaactggtacattgggttgccacccctcttgcccataggccaaccctcctctcttttatctcgttttctcttaaagtatata 31246495  T
Q  201 caccaaacctttt 213  Q
    ||| |||||||||    
T  31246496 cacaaaacctttt 31246508  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 13229332 - 13229262
Alignment:
Q  82 actactacgtagaaacaataattttggtgcctctataaaaatggtacattgggttgccacccctcttgccc 152  Q
    ||||||| ||| ||| ||||||||||||||||||| ||||||||| | ||||| |||| |||||| |||||    
T  13229332 actactaagtaaaaataataattttggtgcctctaaaaaaatggtgccttgggctgccgcccctcctgccc 13229262  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 12174371 - 12174301
Alignment:
Q  52 aaaagaaatatacctatatagttaatactaactactacgtagaaacaataattttggtgcctctataaaaatggt 126  Q
    |||||||||||| |||||||||    ||||||||||| ||| ||| ||||||||||||||||||  |||||||||    
T  12174371 aaaagaaatatatctatatagt----actaactactaagtaaaaataataattttggtgcctcttaaaaaatggt 12174301  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 10668974 - 10669026
Alignment:
Q  74 taatactaactactacgtagaaacaataattttggtgcctctataaaaatggt 126  Q
    |||||||||||| || ||| ||| ||||||||||||||| ||| |||||||||    
T  10668974 taatactaactaataagtaaaaataataattttggtgcccctaaaaaaatggt 10669026  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3193481 - 3193538
Alignment:
Q  1 aattgtgtcattttaattatttga-tgtctttcttcttgcattttttattgcaaaaga 57  Q
    |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  3193481 aattatgtccttttaattatttgaatgtctttcttcttgcattttttattgcaaaaga 3193538  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 39542578 - 39542522
Alignment:
Q  1 aattgtgtcattttaattatttga-tgtctttcttcttgcattttttattgcaaaag 56  Q
    ||||||| | |||||||||| ||| |||||||||||||||||||||||||| |||||    
T  39542578 aattgtgcccttttaattatatgaatgtctttcttcttgcattttttattgtaaaag 39542522  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 39542440 - 39542391
Alignment:
Q  77 tactaactactacgtagaaacaataattttggtgcctctataaaaatggt 126  Q
    |||||||||||||||| ||| |||||||||| |||| || ||||||||||    
T  39542440 tactaactactacgtaaaaataataattttgatgcccctgtaaaaatggt 39542391  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 2114004 - 2113952
Alignment:
Q  6 tgtcattttaattatttga-tgtctttcttcttgcattttttattgcaaaaga 57  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  2114004 tgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 2113952  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 29118501 - 29118452
Alignment:
Q  77 tactaactactacgtagaaacaataattttggtgcctctataaaaatggt 126  Q
    ||||||||||||| || ||| ||||||||||||||| | |||||||||||    
T  29118501 tactaactactacataaaaataataattttggtgccccaataaaaatggt 29118452  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33480450 - 33480507
Alignment:
Q  1 aattgtgtcattttaattatttga-tgtctttcttcttgcattttttattgcaaaaga 57  Q
    |||| |||| |||||||||||||| |||||||||||||| ||||||||||||| ||||    
T  33480450 aattatgtccttttaattatttgaatgtctttcttcttgtattttttattgcagaaga 33480507  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 49164736 - 49164793
Alignment:
Q  1 aattgtgtcattttaattatttga-tgtctttcttcttgcattttttattgcaaaaga 57  Q
    |||||||||||||||||||| | | |||||||||||||||||||| |  |||||||||    
T  49164736 aattgtgtcattttaattatgtaaatgtctttcttcttgcattttattctgcaaaaga 49164793  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 40705890 - 40705935
Alignment:
Q  11 ttttaattatttga-tgtctttcttcttgcattttttattgcaaaa 55  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||    
T  40705890 ttttaattatttgaatgtctttcttcttgcattttttattacaaaa 40705935  T

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Target: scaffold0777 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6015 - 5960
Alignment:
Q  1 aattgtgtcattttaattatttga-tgtctttcttcttgcattttttattgcaaaa 55  Q
    |||| |||| |||||||||||||| ||||||||||| || ||||||||||||||||    
T  6015 aattatgtccttttaattatttgaatgtctttcttcatgtattttttattgcaaaa 5960  T

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Target: scaffold0527 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 1815 - 1758
Alignment:
Q  1 aattgtgtcattttaattatttga-tgtctttcttcttgcattttttattgcaaaaga 57  Q
    ||||||||| |||||||||||| | | | ||||||||| |||||||||||||||||||    
T  1815 aattgtgtctttttaattatttcaatatttttcttctttcattttttattgcaaaaga 1758  T

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Target: scaffold0527; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9878 - 9821
Alignment:
Q  1 aattgtgtcattttaattatttga-tgtctttcttcttgcattttttattgcaaaaga 57  Q
    ||||||||| |||||||||||| | | | ||||||||| |||||||||||||||||||    
T  9878 aattgtgtctttttaattatttcaatatttttcttctttcattttttattgcaaaaga 9821  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 28376708 - 28376642
Alignment:
Q  52 aaaagaaatatacctatatagttaatactaactactacgtagaaacaataattttggtgcctctataaaaa 122  Q
    |||||||||||| |||||||||    ||||||||||| ||| ||| ||||||||||||||| ||| |||||    
T  28376708 aaaagaaatatatctatatagt----actaactactaagtaaaaataataattttggtgccgctaaaaaaa 28376642  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 4350767 - 4350819
Alignment:
Q  74 taatactaactactacgtagaaacaataattttggtgcctctataaaaatggt 126  Q
    |||||||||||||||  || ||| ||||||||||||||||||| |||| ||||    
T  4350767 taatactaactactaaataaaaataataattttggtgcctctaaaaaagtggt 4350819  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 13580454 - 13580506
Alignment:
Q  74 taatactaactactacgtagaaacaataattttggtgcctctataaaaatggt 126  Q
    |||||||||||| || ||| ||| ||||||||||||||| ||| |||||||||    
T  13580454 taatactaactattaagtaaaaataataattttggtgcccctaaaaaaatggt 13580506  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 3265433 - 3265482
Alignment:
Q  9 cattttaattatttga-tgtctttcttcttgcattttttattgcaaaaga 57  Q
    ||||||||||||| || ||||||||||| |||||||||| ||||||||||    
T  3265433 cattttaattattcgaatgtctttcttcgtgcattttttgttgcaaaaga 3265482  T

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