View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2268_high_10 (Length: 252)
Name: NF2268_high_10
Description: NF2268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2268_high_10 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] scaffold0697 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 26662158 - 26661926
Alignment:
| Q |
20 |
tgtatcctatggctacatggttctagatacacaaccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataaatatatagtgatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26662158 |
tgtatcctatggctacatggttctagatacacaaccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataaatatataatgatt |
26662059 |
T |
|
| Q |
120 |
ccaaatttgacaaatctcactttcttaaataatatgtcacatttgggaacatcatctatggaaaatattaagcagtataaaagttgaaaaaagaacatgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26662058 |
ccaaatttgacaaatctcactttcttagataatatgtcacatttgggaacatcatctatggataatattaagcagtataaaagttgaaaaaagaacatgt |
26661959 |
T |
|
| Q |
220 |
tatatacttcattttcaaaattagagttataac |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
26661958 |
tatatacttcattttcaaaattagagttataac |
26661926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 26666368 - 26666166
Alignment:
| Q |
48 |
acacaaccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataaatatatagtgattccaaatttgacaaatctcactttcttaa |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26666368 |
acacaaccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataa-tatatagtgattccaaatttgacaaatctcactttcttag |
26666270 |
T |
|
| Q |
148 |
ataatatgtcacatttgggaacatcatctatggaaaatattaagcagtataaaagttgaaaaaagaacatgttatatacttcattttcaaaattagagtt |
247 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26666269 |
ataatatgtcacacttgggaacatcatctatggataatattaagcagtataaaagttgaaaaaagaacatgttatatacttca-tttcaaaattagagtt |
26666171 |
T |
|
| Q |
248 |
ataac |
252 |
Q |
| |
|
||||| |
|
|
| T |
26666170 |
ataac |
26666166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 26662370 - 26662301
Alignment:
| Q |
105 |
aaatatatagtgattccaaatttgacaaatctcactttcttaaataatatgtcacatttgggaacatcat |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| || ||||| |
|
|
| T |
26662370 |
aaatatatagtgattccaaatttgacaaatctcactttcttagataatatttcacacttggaaatatcat |
26662301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 26665198 - 26665145
Alignment:
| Q |
54 |
ccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataaa |
107 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || || ||||||||||||||||| |
|
|
| T |
26665198 |
ccaatagagtaaataaattttaagtataatcgaagtgattacacaactaataaa |
26665145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 22902629 - 22902560
Alignment:
| Q |
105 |
aaatatatagtgattccaaatttgacaaatctcactttcttaaataatatgtcacatttgggaacatcat |
174 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||| |
|
|
| T |
22902629 |
aaatacatagtgattccaaatttgacaaatctcactttcttagataatatttcacacttgggaatatcat |
22902560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 46886067 - 46886142
Alignment:
| Q |
106 |
aatatatagtgattccaaatttgacaaatctcactttcttaaataatatgtcacatttgggaacatcatctatgga |
181 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||| || | ||| ||||||| ||||| |||||| |
|
|
| T |
46886067 |
aatatatagtgattctaaatttgacaaatctcactttcttagataaaattttacacttgggaatatcatatatgga |
46886142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 21532599 - 21532652
Alignment:
| Q |
54 |
ccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataaa |
107 |
Q |
| |
|
|||||||||||||| |||| |||||||||| || || ||||||||||||||||| |
|
|
| T |
21532599 |
ccaatagagtaaataaatttaaagtataatcgaagtgattacacaactaataaa |
21532652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 3557 - 3610
Alignment:
| Q |
54 |
ccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataaa |
107 |
Q |
| |
|
|||||||||||||| |||| |||||||||| || || ||||||||||||||||| |
|
|
| T |
3557 |
ccaatagagtaaataaatttaaagtataatcgaagtgattacacaactaataaa |
3610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 19702600 - 19702539
Alignment:
| Q |
113 |
agtgattccaaatttgacaaatctcactttcttaaataatatgtcacatttgggaacatcat |
174 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| ||||||| ||||| ||||||| ||||| |
|
|
| T |
19702600 |
agtgattttaaatttgacaaatttcactttcttagataatatttcacacttgggaatatcat |
19702539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 10641397 - 10641344
Alignment:
| Q |
54 |
ccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataaa |
107 |
Q |
| |
|
|||||||||||||| |||| |||||||||| || || |||| |||||||||||| |
|
|
| T |
10641397 |
ccaatagagtaaataaatttaaagtataatcgaagtgattatacaactaataaa |
10641344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 32714210 - 32714263
Alignment:
| Q |
54 |
ccaatagagtaaatgaattcaaagtataattgatgtcattacacaactaataaa |
107 |
Q |
| |
|
|||||||||||||| |||| |||||||||| || || |||| |||||||||||| |
|
|
| T |
32714210 |
ccaatagagtaaataaatttaaagtataatcgaagtgattatacaactaataaa |
32714263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University