View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2268_high_2 (Length: 593)
Name: NF2268_high_2
Description: NF2268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2268_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 257 - 574
Target Start/End: Original strand, 4608512 - 4608828
Alignment:
| Q |
257 |
ccaccgtttgtctattgagcacttatctggtattgaataatattttccttaatgtttagattctttagatttttgcactaaactccacttgttttgtcat |
356 |
Q |
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| T |
4608512 |
ccaccgtttgtctattgagcacttatttggtattgaataatattttccttaatgtttagattctttagatttttgcactaaactccacttgttttgtcat |
4608611 |
T |
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| Q |
357 |
tccacactctctctttttaaattttaccaaattccctcgtattgcgtttattcaacatttgacatagtttttctcattcactcacacttcagattcttgc |
456 |
Q |
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| T |
4608612 |
tccacactctctctttt-aaattttaccaaattccctcgtattgcgtttattcaacatttgacatagtttttctcattcactcacacttcagattcttgc |
4608710 |
T |
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| Q |
457 |
ttgtgaagaagtagttatgggaaaagctagtagatggtttaagagtttgttaggaaacaagaagaaggagaaagagaaggaccacagtgacattaattca |
556 |
Q |
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| T |
4608711 |
ttgtgaagaagtagttatgggaaaagctagtagatggtttaagagtttgttaggaaacaagaagaaggagaaagagaaggaccacagtgacatcaattca |
4608810 |
T |
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| Q |
557 |
ggttcattgacacctgac |
574 |
Q |
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| T |
4608811 |
ggttcattgacacctgac |
4608828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 4608379 - 4608452
Alignment:
| Q |
124 |
gagcctctctctgataactttctgtgacatctttttgtcatgtaatacagttcttcacgagctagtgtcagaag |
197 |
Q |
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| T |
4608379 |
gagcctctctctgataactttctgtgacatctttttgtcatgtaatacagttcttcacgagctagtgtcagaag |
4608452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 4608266 - 4608315
Alignment:
| Q |
11 |
atgaaggtgttttagattttgaagttttatgcaagtaatattctaatggg |
60 |
Q |
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| T |
4608266 |
atgaaggtgttttagattttgaagttttatgcaagtaatattctaatggg |
4608315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 512
Target Start/End: Complemental strand, 43315632 - 43315591
Alignment:
| Q |
471 |
ttatgggaaaagctagtagatggtttaagagtttgttaggaa |
512 |
Q |
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| T |
43315632 |
ttatgggaaaagctagtagatggttgaagggtttgtttggaa |
43315591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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