View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2268_high_6 (Length: 354)
Name: NF2268_high_6
Description: NF2268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2268_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 55245403 - 55245079
Alignment:
| Q |
7 |
caattttgcttaagggcaaagcgcatgcagttccttcgtattgaatgaccaagttgagcactttattgcacctgtgaaccttagcttatctgaagattcc |
106 |
Q |
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| T |
55245403 |
caattttgcttaagggcaaagcgcatgcagttccttcgtattgaatgaccaagttgagcacttcattgcacctgtgaaccttagcttgtctgaagattcc |
55245304 |
T |
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| Q |
107 |
tttgaattgaattgaatgagaaatgggaggtgaagatggtatatgatataagtttgaaggattttcatcagactttgttgaattaagattgttttctagt |
206 |
Q |
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| T |
55245303 |
tttgaattgaattgaatgagaaatgggaggtgaagatggtatatgatataagtttgaaggattttcatcagactttgttgaattaagattgttttctagt |
55245204 |
T |
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| Q |
207 |
gtaaaagaaggtaaggaaaaagacactgtttcacatgaagatagggacacatcgtggctaccaagtactggtcctttcttttggtcaagtgaaacgaaac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55245203 |
gtaaaagaaggtaaggaaaaagacactgtttcacatgaagatagggacacatcgtggctaccaagtactggtcctttcttttggtcaagtgaaacgaaac |
55245104 |
T |
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| Q |
307 |
gagggtttcattactttttctgctt |
331 |
Q |
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||||||||||||||||||||||||| |
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| T |
55245103 |
gagggtttcattactttttctgctt |
55245079 |
T |
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