View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2268_low_10 (Length: 274)
Name: NF2268_low_10
Description: NF2268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2268_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 49686714 - 49686973
Alignment:
| Q |
1 |
caaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattcaaca |
100 |
Q |
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| T |
49686714 |
caaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattcaaca |
49686813 |
T |
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| Q |
101 |
atatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcgat |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49686814 |
atatctaatgatgagcccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcgat |
49686913 |
T |
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| Q |
201 |
tgttagctgatgaaattacctttaatttcaaatcttcatattattgtcgacagtgttatt |
260 |
Q |
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| T |
49686914 |
tgttagctgatgaaattacctttaatttcaaatcttcatattattgtcgacagtgttatt |
49686973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 49690983 - 49691235
Alignment:
| Q |
1 |
caaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattcaaca |
100 |
Q |
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|||||||| |||||||| |||||||| || |||| |||| ||||||||||| ||||||| | |||| || ||||||||||||||| || ||||||| |
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| T |
49690983 |
caaatgcaaccatacccgaaaattaggcattcaccctccaagtaatttcttcataaatagttcttgtcatccctatgatttttactttggcgattcaa-- |
49691080 |
T |
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| Q |
101 |
atatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcgat |
200 |
Q |
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| T |
49691081 |
-tatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggtaacccatttccct |
49691179 |
T |
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| Q |
201 |
tgttagctgatgaaattacctttaatttcaaatcttcatattattgtcgacagtgt |
256 |
Q |
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| T |
49691180 |
ttttaactaatgaaattacctttcagttccaatcttcatatgactgtcaacagtgt |
49691235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 49679349 - 49679586
Alignment:
| Q |
1 |
caaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattcaaca |
100 |
Q |
| |
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|||||||| || ||||| |||||||| || | | || |||| ||||||||||| ||||||| | |||| || ||||||||||||||| || ||||||| |
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| T |
49679349 |
caaatgcaaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatgatttttactttggcgattcaa-- |
49679446 |
T |
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| Q |
101 |
atatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcgat |
200 |
Q |
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| T |
49679447 |
-tatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggcaatccatttccat |
49679545 |
T |
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| Q |
201 |
tgttagctgatgaaattacctttaatttcaaatcttcatat |
241 |
Q |
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| |||| |||| |||| |||||| | |||||| |||||||| |
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| T |
49679546 |
tcttagatgatcaaataacctttcagttcaaaccttcatat |
49679586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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