View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2268_low_4 (Length: 391)
Name: NF2268_low_4
Description: NF2268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2268_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 43132540 - 43132919
Alignment:
| Q |
1 |
attaacgtacccactaacttagtaatatttacctatccatcnnnnnnnnnnnnnnnnttcagtttaatatatacactaaaattccgtgattaacacttgt |
100 |
Q |
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| T |
43132540 |
attaacgtatccactaacttagtaatatttacctatccatcaaaaataaataaaaaattcagtttaatatatacactaaaattacctgattaacacttgt |
43132639 |
T |
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| Q |
101 |
ttctcgcgctccgatgtgttatagttgtgactttctaaagctataaatcctagcttttgatttcactgtgaaaacaaaggagtactaaatccattaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
43132640 |
ttctcgcgctccgatgtgttatagttgtgactttctaaagctataaatcctagcttttgatttcactgtgaaaacaaaggagtactaaatccattactct |
43132739 |
T |
|
| Q |
201 |
gtgtagatagtgtaccatggttgcacaaatagtcaaatacttgtagatattcctgcnnnnnnnntctataatactaactaaaaacatttaaaataaattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43132740 |
gtgtagatagtgtaccatggttgcacaaatagtcaaatacttgtagatattcctgcaaaaaaattctataatactaactaaaaacatttaaaataaattc |
43132839 |
T |
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| Q |
301 |
ccctgctttggctaggattgagaattt----tctatgtccttcacaatttcactaatagcagttttaaccatatttacag |
376 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132840 |
ccctgctttggctaggattgagaattttctatctatgtccttcacaatttcactaatagcagttttaaccatatttacag |
43132919 |
T |
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