View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2268_low_6 (Length: 357)
Name: NF2268_low_6
Description: NF2268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2268_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 8642217 - 8641887
Alignment:
| Q |
16 |
gtgctcttgctccataggacctcaccatcaattccagtaagatgctgatcatcgagacgcttccatgatttaatcgacttgacggccccccaacttcctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| || ||||| ||||||| |
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| T |
8642217 |
gtgctcttgctccataggacctcaccatcaattccagtaagatgctgatcatcgaggcgcttccatgatttaattgatttgacagctccccagcttcctt |
8642118 |
T |
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| Q |
116 |
tatctgtcttctccaagctagctaccaccactcttgccctccgagaccatccagcctttccataagcatggtatccgaaccctccagcataacaaagttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8642117 |
tatctgtcttctccaagctagctaccaccactcttgccctccgagaccatccagcctttccataagcatggtatccgaaccctccagcataacaaagttg |
8642018 |
T |
|
| Q |
216 |
tatatccattagcttcccgcagaagtcattgaggtgatcgtggccaacgaaaacggccttcacgtcttctgctccaaccaaggttgtgaagaaaccagag |
315 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
8642017 |
tatatccattagcttgccgcagaagtcattcaggtgatcgtggccaacgaaaacggccttcacgtctcctgctccgaccaaggttgtgaagaaaccagag |
8641918 |
T |
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| Q |
316 |
ttcactgaagcagaaccaatgccatcaccgc |
346 |
Q |
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||||| || ||||||| |||||||||||||| |
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| T |
8641917 |
ttcaccgacgcagaactaatgccatcaccgc |
8641887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 8648797 - 8648467
Alignment:
| Q |
16 |
gtgctcttgctccataggacctcaccatcaattccagtaagatgctgatcatcgagacgcttccatgatttaatcgacttgacggccccccaacttcctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| || ||||| ||||||| |
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| T |
8648797 |
gtgctcttgctccataggacctcaccatcaattccagtaagatgctgatcatcgaggcgcttccatgatttaattgatttgacagctccccagcttcctt |
8648698 |
T |
|
| Q |
116 |
tatctgtcttctccaagctagctaccaccactcttgccctccgagaccatccagcctttccataagcatggtatccgaaccctccagcataacaaagttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648697 |
tatctgtcttctccaagctagctaccaccactcttgccctccgagaccatccagcctttccataagcatggtatccgaaccctccagcataacaaagttg |
8648598 |
T |
|
| Q |
216 |
tatatccattagcttcccgcagaagtcattgaggtgatcgtggccaacgaaaacggccttcacgtcttctgctccaaccaaggttgtgaagaaaccagag |
315 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
8648597 |
tatatccattagcttgccgcagaagtcattcaggtgatcgtggccaacgaaaacggccttcacgtctcctgctccgaccaaggttgtgaagaaaccagag |
8648498 |
T |
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| Q |
316 |
ttcactgaagcagaaccaatgccatcaccgc |
346 |
Q |
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||||| || ||||||| |||||||||||||| |
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| T |
8648497 |
ttcaccgacgcagaactaatgccatcaccgc |
8648467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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