View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2268_low_8 (Length: 348)
Name: NF2268_low_8
Description: NF2268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2268_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 14880958 - 14881297
Alignment:
| Q |
1 |
tcggtattagaatcaagattctcaacgattgctttcgccaatccaaaatctcccaagtgtgcatccatattggaatctaacaatatattgctggatttga |
100 |
Q |
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| T |
14880958 |
tcggtattagaatcaagattctcaacgattgctttcgccaatccaaaatctcccaagtgtgcatccatattggaatctaacaatatattgctggatttga |
14881057 |
T |
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| Q |
101 |
tgtccctatgaatgatccttggcacacaatcatgatgaaggtactccattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaatcaaggct |
200 |
Q |
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| T |
14881058 |
tatcccggtgaatgatctttggcacacaatcatgatgaaggtactccattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaatcaaggct |
14881157 |
T |
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| Q |
201 |
tctccttaacttgagagcatttccatgtaaccaatcccaaacacttccattctccatgaactcatatatcaacagattgcaaccatttcctttgtgtcta |
300 |
Q |
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| T |
14881158 |
tctccttaacttgagagcatttccatgtaaccaatcccaaacacttccattctccatgaactcatatatcaacagattgcaaccatttcctttgtgtcta |
14881257 |
T |
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| Q |
301 |
ttgctacaacaaccaaccagtttcaccaaatgcctatgct |
340 |
Q |
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| T |
14881258 |
ttgctacaacaaccaaccagtttcaccaaatgtctatgct |
14881297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 39006831 - 39006663
Alignment:
| Q |
30 |
tgctttcgccaatccaaaatctcccaagtgtgcatccatattggaatctaacaatatattgctggatttgatgtccctatgaatgatccttggcacacaa |
129 |
Q |
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| T |
39006831 |
tgcttttgccagtccaaaatctcccaagtgtgcctccattttggaatctagcaatatgttgctggatttgatgtctctgtgaatgatctttggtgcacaa |
39006732 |
T |
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| Q |
130 |
tcatgatgaaggtactccattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaatcaagg |
198 |
Q |
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| T |
39006731 |
tcgtgatgtaggtactccactccttgagctaaacccacagcaattttgaatcttgtctcccaatcaagg |
39006663 |
T |
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