View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2268_low_9 (Length: 284)
Name: NF2268_low_9
Description: NF2268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2268_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 22536941 - 22537035
Alignment:
| Q |
172 |
catcacataatctagatcaacttcttagttgcttggttgatcatctcgaggtttgctcattttcacgattt-attttttaaaaagctataatcac |
265 |
Q |
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| T |
22536941 |
catcacataatctagatcaacttcttaattgcttggttgataatctcgaggtttgctcattttcacgatttaactttttaaaaagccataatcac |
22537035 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 22536786 - 22536839
Alignment:
| Q |
17 |
aaactaaaatagaaatattatcttggaaaaattatgaagaaggatatattaaac |
70 |
Q |
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| T |
22536786 |
aaactaaaatagaaatattatcttggaaaaattataaagaaggatatattaaac |
22536839 |
T |
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