View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_high_12 (Length: 266)
Name: NF2269_high_12
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 505602 - 505368
Alignment:
| Q |
16 |
atcaggagacaaatattacaattaagcctaattatttctagcttggtcttctagtttttctctctgaataatattagactaatatattttgttaatgatg |
115 |
Q |
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| T |
505602 |
atcaggagacaaatattacatttaagcctaattatttctagctcggtcttctagtttttctctctaaataatattagactaatatatgttgttaatgatg |
505503 |
T |
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| Q |
116 |
taatgcatgaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
505502 |
taatgcatgaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttctctgttgcgtatttcttat |
505403 |
T |
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| Q |
216 |
gcccttcaaacgagaccatgattgagagttgcaaa |
250 |
Q |
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|||||||||| || ||||||||||||||||||||| |
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| T |
505402 |
gcccttcaaatgacaccatgattgagagttgcaaa |
505368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 16702318 - 16702214
Alignment:
| Q |
126 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttcaaa |
225 |
Q |
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| T |
16702318 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttcaaa |
16702219 |
T |
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| Q |
226 |
cgaga |
230 |
Q |
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|||| |
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| T |
16702218 |
tgaga |
16702214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 17676554 - 17676450
Alignment:
| Q |
126 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttcaaa |
225 |
Q |
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|||||||||| |||||| | || ||||||||||||||||||||||| ||||| |||| ||| |||||||| ||| | ||||||||||| ||||||||||| |
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| T |
17676554 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttcaaa |
17676455 |
T |
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| Q |
226 |
cgaga |
230 |
Q |
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|||| |
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| T |
17676454 |
tgaga |
17676450 |
T |
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