View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2269_high_16 (Length: 251)

Name: NF2269_high_16
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2269_high_16
NF2269_high_16
[»] chr4 (3 HSPs)
chr4 (1-251)||(1984422-1984672)
chr4 (1-224)||(1977501-1977724)
chr4 (5-210)||(1948696-1948901)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 1984422 - 1984672
Alignment:
Q  1 acgagttataaccaaaggtccggatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaagg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||||||    
T  1984422 acgagttataaccaaaggtcccgatccaaccgatgattcgtatgcaaccaagtttcgaagaaaaacttcggtgttgacatccaaactaattgtgggaagg 1984521  T
Q  101 tgaaaagtgtttgttttagcatcaaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaa 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  1984522 tgaaaagtgtttgttttagcatcaaaactaatgcttgatatgcttccttttgcaggtaagaaattaacccctgcagtcacaagttgttcaacagaaggaa 1984621  T
Q  201 tagtgatttcctccaccaagggtgttttgttctttagagtacttgagtttt 251  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  1984622 tagcgatttcctccaccaagggtgttttgttctttagagtactagagtttt 1984672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1977501 - 1977724
Alignment:
Q  1 acgagttataaccaaaggtccggatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaagg 100  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |  |||||||||||||| |||||||| |||||  ||||||||    
T  1977501 acgagttataaccaaaggtcccgatccaaccgatgattcatatgcaaccaagtttcttagaaaaacttcggtgttaacatccaatctaatcatgggaagg 1977600  T
Q  101 tgaaaagtgtttgttttagcatcaaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaa 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||  ||||||||| |||||||||||||    
T  1977601 tgaaaagtgtttgttttagcatcaaaactaatgcttgatatgcttccatttgtaggtaagaaattaactcctgcaagcacaagttgctcaacagaaggaa 1977700  T
Q  201 tagtgatttcctccaccaagggtg 224  Q
    ||| |||||| |||| ||| ||||    
T  1977701 tagcgatttcatccatcaaaggtg 1977724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 1948901 - 1948696
Alignment:
Q  5 gttataaccaaaggtccggatccaaccgatgattcgtatgcaaccaagtttctaaagaaaacttcggtgttcacatccaaactaattgtgggaaggtgaa 104  Q
    ||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |  ||||||||||| || ||||||||||  ||  | ||||||| ||    
T  1948901 gttataaccaatggtcccgatccaaccgatgattcatacgcaaccaagtttcttagaaaaacttcggtattaacatccaaaccgataataggaaggtaaa 1948802  T
Q  105 aagtgtttgttttagcatcaaaattaatgcttgatatgcttccatttgtaggtaagaaattaacccccgcagtcacaagttgttcaacagaaggaatagt 204  Q
    ||||  ||||||| ||||||||| |||| ||||||||||| ||||| |||||  | ||||| || || |   ||||||||| || |||||||||||||||    
T  1948801 aagttcttgtttttgcatcaaaactaatacttgatatgctcccattagtaggagaaaaattcactcctgatttcacaagttctttaacagaaggaatagt 1948702  T
Q  205 gatttc 210  Q
    ||||||    
T  1948701 gatttc 1948696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University