View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_high_4 (Length: 455)
Name: NF2269_high_4
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 34905942 - 34906379
Alignment:
| Q |
1 |
tatgtccagaggcaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaataccagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905942 |
tatgtccagaggcaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaataccagt |
34906041 |
T |
|
| Q |
101 |
acttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaaatcactctcaattacaatgacataagatacnnnnnnntgcataatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
34906042 |
acttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaaatcactctcaattacaatgacataaaatacaaaaaaatgcataatta |
34906141 |
T |
|
| Q |
201 |
ttcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaactaatcaaatgcagaactctgacctccaaaagc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34906142 |
ttcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaactaaccaaatgcagaactctgacctccaaaagc |
34906241 |
T |
|
| Q |
301 |
agaggtcgtactcccaaatgggctgctggtgccaaatgcagaaagtgttccaaatgggtctgtaatggatgctgcttgtgcaaccatagaacttcgggga |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
34906242 |
agaggtcgtactcccaaatgggctgttggtgccaaatgcagaaagtgttccaaatgggtctgtaatgggtgctgcttgtgcaaccatagaactttgggga |
34906341 |
T |
|
| Q |
401 |
atagccctgtcaaacaaaaaacatccaggcaacaaaaa |
438 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
34906342 |
atagccctgtcaaacaaaaaacatccaggcaacaaaaa |
34906379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 3 - 343
Target Start/End: Original strand, 34895435 - 34895776
Alignment:
| Q |
3 |
tgtccagaggcaccactatccgcttccactgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaataccagtac |
102 |
Q |
| |
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|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34895435 |
tgtccagaggtgccactatctgcttccactgtagctgagtaactagctattctacttccaccccgttgacctccaaatcctgactgcccaataccagtac |
34895534 |
T |
|
| Q |
103 |
ttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatg-aaaaatcactctcaattacaatgacataagatac-nnnnnnntgcataatta |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
34895535 |
ttccaaatgcttgagttggagtctgtgatcctgcataagaaaatatgaaaaaatcactctcaattacaatgacatgtgatacaaaaaaaatacataatta |
34895634 |
T |
|
| Q |
201 |
ttcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaactaatcaaatgcagaactctgacctccaaaagc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |
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| T |
34895635 |
ttcaagtcccttacatcttaaaaattgaca-tatcacagagaagataaaattctaaaaactattgaactcaccaaatgcagaactctgacctacaaaagc |
34895733 |
T |
|
| Q |
301 |
agaggtcgtactcccaaatgggctgctggtgccaaatgcagaa |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34895734 |
agaggtcgtactcccaaatgggctgctggtgccaaatgcagaa |
34895776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 73 - 285
Target Start/End: Original strand, 34915640 - 34915854
Alignment:
| Q |
73 |
ctccaaatcctgactgcccaataccagtacttccaaatgcttgagtgggagtctgtgatcctgcataagaaaatatgaaaa-atcactctcaattacaat |
171 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||| | ||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
34915640 |
ctccaaatcccgactgcccaataccagtatttccaaaaaccggagcgggagtctgtgatcctgcacgagacaatatgaaaagatcactctcaattacaat |
34915739 |
T |
|
| Q |
172 |
gacataagatacnnnnnnn-tgcataattattcaagtcccttacatcttaaaaattgacattatcgtagagaagataaaattctaaaaactattgaacta |
270 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
34915740 |
gacataagatacaaaaaaaatgcataattattcaagtcctttacatcttaaaaattgacattatcgtagagaagataaaattataaaaactattgaattc |
34915839 |
T |
|
| Q |
271 |
atcaaatgcagaact |
285 |
Q |
| |
|
| ||||||||||||| |
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|
| T |
34915840 |
accaaatgcagaact |
34915854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 338 - 438
Target Start/End: Original strand, 34893499 - 34893599
Alignment:
| Q |
338 |
gcagaaagtgttccaaatgggtctgtaatggatgctgcttgtgcaaccatagaacttcggggaatagccctgtcaaacaaaaaacatccaggcaacaaaa |
437 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| |
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| T |
34893499 |
gcaggaagtgttccaaatgggtttgtaatgggtgctgcttgtgcaaccatagaactctggggaatagccctgtcaaacaaaaaacatccaggtaaaaaaa |
34893598 |
T |
|
| Q |
438 |
a |
438 |
Q |
| |
|
| |
|
|
| T |
34893599 |
a |
34893599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 34909377 - 34909526
Alignment:
| Q |
32 |
tgtagccgagtaactagctattctacttccaccccgttgtcctccaaatcctgactgcccaataccagtacttccaaatgcttgagtgggagtctgtgat |
131 |
Q |
| |
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|||||| ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||| | ||||||| | ||| ||||| || ||| |
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| T |
34909377 |
tgtagctgagtaactagctactctacttccacctcgttgtcctccaaatcccgactgcccaatatcagcatttccaaaacccggagcaggagtatgcgat |
34909476 |
T |
|
| Q |
132 |
cctgcataagaaaatatgaaaa-atcactctcaattacaatgacataaga |
180 |
Q |
| |
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|||||| ||| |||||||||| |||| |||||||||||||| ||||||| |
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|
| T |
34909477 |
cctgcacgagacaatatgaaaagatcagtctcaattacaatggcataaga |
34909526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 34909598 - 34909701
Alignment:
| Q |
240 |
agaagataaaattctaaaaactattgaactaatcaaatgcagaactctgacctccaaaagcagaggtcgtactcccaaatgggctgctggtgccaaatgc |
339 |
Q |
| |
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|||||||||||| ||||||||||||||| | | ||||| |||||||||||||||| | | ||||| |||| |||||||| |||| |||| |||||||| |
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| T |
34909598 |
agaagataaaatcctaaaaactattgaaatcaccaaatatagaactctgacctccataggttgaggttgtacgcccaaatgtgctgttggtaccaaatgc |
34909697 |
T |
|
| Q |
340 |
agaa |
343 |
Q |
| |
|
|||| |
|
|
| T |
34909698 |
agaa |
34909701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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