View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_high_5 (Length: 418)
Name: NF2269_high_5
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 48391017 - 48391406
Alignment:
| Q |
1 |
atgtctatgtatcatttgctcatgaaatagagtatggtagattaaaacaannnnnnnacgagtaggaataagtattccaagttcacaacgtacacattat |
100 |
Q |
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| T |
48391017 |
atgtctatgtatcatttactcatgaaatagagcatggtagattaaaacattttttttacgagtaggagtaagtattccaagttcacaatgtacacattat |
48391116 |
T |
|
| Q |
101 |
acaccaaccacttgccctgaactttggtttgtgaataaaaatatttgtatc--tatatatggaaaggaaagtgaagagaatgagagttgaaattctctaa |
198 |
Q |
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| T |
48391117 |
acaccaaccacttgccctaaactttggtttgtgaataaaaatatttgtatctatatatatggaaaggaaagtgaagagaatgagagttgaaattctctaa |
48391216 |
T |
|
| Q |
199 |
acataggttattttttgtctcaaccctctgctttcaaagagaaaagacttcaataatatgaattttagctgatagataagtaaaaatttgtcaaaaataa |
298 |
Q |
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| T |
48391217 |
aca-gtttttttttttgtctcaactctttgcttttaaagagaaaagacttcaataat------------------ataagtaaaaatttgtcaaaaatta |
48391297 |
T |
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| Q |
299 |
ttttatcgaagatttgaattcaa-nnnnnnnnccaaaggatccttcctaaaattaagggtaatgttttgtggatgtaaaaagtttatttccctattataa |
397 |
Q |
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|| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48391298 |
ttatatcgaagatttaaattcaatttttttttccaaaggatccttcctaaaattaagggtaatgttttgtggatgtaaaaagtttatttccctattataa |
48391397 |
T |
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