View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_high_9 (Length: 291)
Name: NF2269_high_9
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 36940717 - 36941000
Alignment:
| Q |
1 |
ctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccaggagtctcttccaatccacttgtg--ctcacaaatgcagaa |
98 |
Q |
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| T |
36940717 |
ctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccaggagtctcttccaatccacatgtgtgctcacaaatgcagaa |
36940816 |
T |
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| Q |
99 |
ctctcacgagacaattcagaaattgatatagttaatttaatttcatactagtgagaactcgcacaatgtaatccttatttcttagtactactatttcata |
198 |
Q |
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| T |
36940817 |
ctctcacgagacaattcagaaattgatatagttaatttaatttcatactagtgagaactcgcacaatgtaatccttatttcttagtactactatttcata |
36940916 |
T |
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| Q |
199 |
tcacaaattagtctgtagtactcattttttattttgtttgtgttctaaaaaagagttggagcttgttatgctaggaagaataat |
282 |
Q |
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| T |
36940917 |
tcacaaattagtctgtagtactcattttttattttgtttgtgttctaaaaacgagttggagcttgttatgctaggaagaataat |
36941000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36936019 - 36936067
Alignment:
| Q |
1 |
ctactttcgcttcctccttcttcattcctggaaaatcagcattgaacac |
49 |
Q |
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| T |
36936019 |
ctactttcacttcctccttcttcattcctggaagatccgccttgaacac |
36936067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 35097751 - 35097650
Alignment:
| Q |
10 |
cttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccaggagtctc-ttccaatccacttgtg--ctcacaaatgcagaactctcacg |
106 |
Q |
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| T |
35097751 |
cttcttccttcttcagtccaggaagatcagcctcgaacacatgtgcttctggggtctccttccaatccacttgtgtgcttgcaaatgcagaattctcacg |
35097652 |
T |
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| Q |
107 |
ag |
108 |
Q |
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|| |
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| T |
35097651 |
ag |
35097650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 24014430 - 24014526
Alignment:
| Q |
10 |
cttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccaggagtct-cttccaatcca--cttgtgctcacaaatgcagaactctc |
103 |
Q |
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||||||||||||||| ||| |||| |||||| |||||||| |||||| | || |||| ||||||||| | || ||||||||||| |||||| |||| |
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| T |
24014430 |
cttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttccaatcaatcctggtgctcacaaaagcagaattctc |
24014526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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