View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2269_low_18 (Length: 259)

Name: NF2269_low_18
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2269_low_18
NF2269_low_18
[»] chr8 (8 HSPs)
chr8 (17-241)||(4506346-4506570)
chr8 (27-227)||(15076845-15077045)
chr8 (27-227)||(15165098-15165298)
chr8 (85-215)||(15171523-15171653)
chr8 (41-197)||(15751351-15751507)
chr8 (72-197)||(13033603-13033728)
chr8 (72-197)||(15214387-15214512)
chr8 (120-157)||(15029944-15029981)
[»] chr7 (2 HSPs)
chr7 (17-197)||(1617971-1618151)
chr7 (17-165)||(1626521-1626669)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 4506346 - 4506570
Alignment:
Q  17 agtaaaagggtagcccaaaaaatttgcaattctattgacttgaaaaattgcattctctttaacatcttcatatttcaagaatagaactttgtgtgatcta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4506346 agtaaaagggtagcccaaaaaatttgcaattctattgacttgaaaaattgcattctctttaacatcttcatatttcaagaatagaactttgtgtgatcta 4506445  T
Q  117 gccatgctttccttcaagtaacccaacttatgatcccaaaatgaaccaaatggacttatcccatcacaataactttcaaaaatttcatctatgcttaaag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4506446 gccatgctttccttcaagtaacccaacttatgatcccaaaatgaaccaaatggacttatcccatcacaataactttcaaaaatttcatctatgcttaaag 4506545  T
Q  217 ttggtaaagattgatttgaccttat 241  Q
    |||||||||||||||||||||||||    
T  4506546 ttggtaaagattgatttgaccttat 4506570  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 15077045 - 15076845
Alignment:
Q  27 tagcccaaaaaatttgcaattctattgacttgaaaaattgcattctctttaacatcttcatatttcaagaatagaactttgtgtgatctagccatgcttt 126  Q
    |||||||||||  |||||| |||| |||| |||||||||| ||  |||||||  |||||||||||||| |||| |||||||| ||  |||  ||| ||||    
T  15077045 tagcccaaaaatgttgcaagtctagtgacatgaaaaattggatcttctttaagttcttcatatttcaaaaatataactttgtctggcctaatcatacttt 15076946  T
Q  127 ccttcaagtaacccaacttatgatcccaaaatgaaccaaatggacttatcccatcacaataactttcaaaaatttcatctatgcttaaagttggtaaaga 226  Q
    | ||||||||||| || ||||| ||||||||||||||||||||| | ||||||| |||| ||||||||||| |||| |||| |||||||  |||||||||    
T  15076945 ctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagtaatcccattacaaaaactttcaaaagtttcctctaagcttaaaactggtaaaga 15076846  T
Q  227 t 227  Q
    |    
T  15076845 t 15076845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 15165098 - 15165298
Alignment:
Q  27 tagcccaaaaaatttgcaattctattgacttgaaaaattgcattctctttaacatcttcatatttcaagaatagaactttgtgtgatctagccatgcttt 126  Q
    |||||||||||  |||||| |||| |||| |||||||||| ||  |||||||  |||||||||||||| |||| || ||||| ||  |||| ||| ||||    
T  15165098 tagcccaaaaatgttgcaagtctagtgacatgaaaaattggatcttctttaagttcttcatatttcaaaaataaaattttgtctggactagtcatacttt 15165197  T
Q  127 ccttcaagtaacccaacttatgatcccaaaatgaaccaaatggacttatcccatcacaataactttcaaaaatttcatctatgcttaaagttggtaaaga 226  Q
    | ||||||||||| ||  |||| ||||||||||||||||||||| ||| ||||| |||| ||||||||||| |||| | || ||||| | || |||||||    
T  15165198 ctttcaagtaacctaaagtatgctcccaaaatgaaccaaatggagttaccccattacaaaaactttcaaaagtttcctttaagcttacaatttgtaaaga 15165297  T
Q  227 t 227  Q
    |    
T  15165298 t 15165298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 15171523 - 15171653
Alignment:
Q  85 catatttcaagaatagaactttgtgtgatctagccatgctttccttcaagtaacccaacttatgatcccaaaatgaaccaaatggacttatcccatcaca 184  Q
    |||||||||| |||| |||||||| ||| |||| ||| ||||| ||||||||||| || ||||| ||||||||||||||||||||| | | ||||| |||    
T  15171523 catatttcaaaaataaaactttgtctgacctagtcatactttctttcaagtaacctaaattatgctcccaaaatgaaccaaatggagtaaccccattaca 15171622  T
Q  185 ataactttcaaaaatttcatctatgcttaaa 215  Q
    | ||||||||||| |||| |||| |||||||    
T  15171623 aaaactttcaaaagtttcctctaagcttaaa 15171653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 15751507 - 15751351
Alignment:
Q  41 tgcaattctattgacttgaaaaattgcattctctttaacatcttcatatttcaagaatagaactttgtgtgatctagccatgctttccttcaagtaaccc 140  Q
    ||||||||| ||||| ||| || || |||| ||||||| |||||||||||||| ||||| ||| |||| || |||||| ||||| || ||||| || ||     
T  15751507 tgcaattcttttgacatgagaatttccattttctttaagatcttcatatttcatgaataaaaccttgtctggtctagctatgctctcgttcaaatagcct 15751408  T
Q  141 aacttatgatcccaaaatgaaccaaatggacttatcccatcacaataactttcaaaa 197  Q
    |||  ||| ||||||||||||||||   ||| |||||| | |||||| |||||||||    
T  15751407 aacacatggtcccaaaatgaaccaacatgacatatccccttacaatacctttcaaaa 15751351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 13033728 - 13033603
Alignment:
Q  72 tctttaacatcttcatatttcaagaatagaactttgtgtgatctagccatgctttccttcaagtaacccaacttatgatcccaaaatgaaccaaatggac 171  Q
    |||||||  ||||||||||||||||||| ||| || |||| |||  | || || |||||||||||||||||| |||  |||||||| | |||||||  ||    
T  13033728 tctttaaggtcttcatatttcaagaataaaaccttatgtggtctttctatactctccttcaagtaacccaacatattgtcccaaaacggaccaaataaac 13033629  T
Q  172 ttatcccatcacaataactttcaaaa 197  Q
     ||| || | |||||| |||||||||    
T  13033628 atattcccttacaatacctttcaaaa 13033603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 15214387 - 15214512
Alignment:
Q  72 tctttaacatcttcatatttcaagaatagaactttgtgtgatctagccatgctttccttcaagtaacccaacttatgatcccaaaatgaaccaaatggac 171  Q
    |||||||  ||||||||||||||||||| |||  | | || |||  | ||||| |||||||||||||||||| ||| ||||||||| | |||||||  ||    
T  15214387 tctttaaggtcttcatatttcaagaataaaaccctatctggtctttctatgctctccttcaagtaacccaacatattatcccaaaacggaccaaataaac 15214486  T
Q  172 ttatcccatcacaataactttcaaaa 197  Q
     ||| || | |||||| |||||||||    
T  15214487 atattcccttacaatacctttcaaaa 15214512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 15029981 - 15029944
Alignment:
Q  120 atgctttccttcaagtaacccaacttatgatcccaaaa 157  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  15029981 atgctctccttcaagtaacccaacatatgatcccaaaa 15029944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 1617971 - 1618151
Alignment:
Q  17 agtaaaagggtagcccaaaaaatttgcaattctattgacttgaaaaattgcattctctttaacatcttcatatttcaagaatagaactttgtgtgatcta 116  Q
    |||||||||  | |||||||| | ||||||||| || || |||||| ||  ||  ||||||| ||||||||||| |||||||| ||  |||| || ||||    
T  1617971 agtaaaaggacaacccaaaaactctgcaattcttttcacatgaaaatttatatcttctttaagatcttcatattgcaagaataaaatcttgtttggtcta 1618070  T
Q  117 gccatgctttccttcaagtaacccaacttatgatcccaaaatgaaccaaatggacttatcccatcacaataactttcaaaa 197  Q
    || ||||| |||||||||||||||||| |||| ||||| |||| |||||   ||| |||||| | |||||| |||||||||    
T  1618071 gctatgctctccttcaagtaacccaacatatggtcccagaatggaccaacatgacatatccctttacaatatctttcaaaa 1618151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 1626521 - 1626669
Alignment:
Q  17 agtaaaagggtagcccaaaaaatttgcaattctattgacttgaaaaattgcattctctttaacatcttcatatttcaagaatagaactttgtgtgatcta 116  Q
    |||||||||  | |||||||| | ||||||||| || || |||||| ||  ||  ||||||| |||||||||||||||||||| ||  |||| || ||||    
T  1626521 agtaaaaggacaacccaaaaactctgcaattcttttaacatgaaaatttatatcttctttaagatcttcatatttcaagaataaaatcttgtttggtcta 1626620  T
Q  117 gccatgctttccttcaagtaacccaacttatgatcccaaaatgaaccaa 165  Q
    ||  |||| |||||||||||||||||| |||| |||||||||| |||||    
T  1626621 gctttgctctccttcaagtaacccaacatatggtcccaaaatggaccaa 1626669  T

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