View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_low_2 (Length: 697)
Name: NF2269_low_2
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 13 - 665
Target Start/End: Original strand, 5217467 - 5218136
Alignment:
| Q |
13 |
aatatatacaggttgatagtgcaaacaagtatgggatattattagagatggtacaggtgttgacagatcttgacctcatcatttccaagtcatacatttc |
112 |
Q |
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| T |
5217467 |
aatatatacaggttgatagtgcaaacaagtatgggatattattagagatggtacaggtgttgacagatcttgacctcatcatttccaagtcatacatttc |
5217566 |
T |
|
| Q |
113 |
ctcagatggtggatggtttatggacggtcagtgtttatccttcttagagtggaattcctttaacattgtttacctgtatttttccataaaccatgataat |
212 |
Q |
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| T |
5217567 |
ctcagatggtggatggtttatggacggtcagtgtttatccttcttagagtggaattcctttaacattgtttacctgtatttttccataaaccatgataat |
5217666 |
T |
|
| Q |
213 |
gataattgagcaatttatcattnnnnnnnngcttacttttatcttgttttttgacctattattatgactaccacattatcatatgatatcagcaaaattt |
312 |
Q |
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| T |
5217667 |
gataattgagcaatttatcatttaaaaaaagcttacttttatcttgtttttggacctattattatgactaccacattatcatatgatatcagcaaaattt |
5217766 |
T |
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| Q |
313 |
tagtggttcggttctgatacaagttgtgtggtgcgtgtctctttttgttacacaatgcagtgttccacgtcacggatcaagctggcaagaagcttactga |
412 |
Q |
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| T |
5217767 |
tagtggttcggttctgatacaagttgtgtggtgcgtgtctctttttgttacacaatgcagtgttccacgtcacggatcaagctggcaagaagcttactga |
5217866 |
T |
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| Q |
413 |
caggaacctcatgcaccaaattgagaaggnnnnnnnngtctcttcctatcataaaatattttgtaccatactttttgattgaatgtgtatctagtgt-ca |
511 |
Q |
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| T |
5217867 |
caggaacctcatgcaccaaattgagaagg-tttttttgtctcttcctatcgtaaaatattttgtaccatacttttt-attgaatgtatatctagtgtcca |
5217964 |
T |
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| Q |
512 |
atgtgcgtccgtgtcata------------------ttattatagttaattatattattttctcagataattatcagttttaatgtgtcatttcggtgtt |
593 |
Q |
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| T |
5217965 |
atgtgtgtccgtgtcatacattgatactgacatatgtcattacagttaattatattattttttcaaataattattggttttaatgtgtcatttcgatgtt |
5218064 |
T |
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| Q |
594 |
gatttcgtgtttggtgtgtttctctattgttttaatcatatgaagtaactaattcaattatatgaaattaaa |
665 |
Q |
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| T |
5218065 |
gatgttatgttcgatgcgtttctcaattgtttcaatcatatgaagtaactaattcaattatatgaaattaaa |
5218136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 543 - 681
Target Start/End: Original strand, 5218285 - 5218423
Alignment:
| Q |
543 |
ttatattattttctcagataattatcagttttaatgtgtcatttcggtgttgatttcgtgtttggtgtgtttctctattgttttaatcatatgaagtaac |
642 |
Q |
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| T |
5218285 |
ttatatcattttctcagataattatcggttttaatgtgtcatttcggtgttgatttcgtgtttggtgtgtttctctattgttttaatcatatgaagtaac |
5218384 |
T |
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| Q |
643 |
taattcaattatatgaaattaaacagaagatgtatattt |
681 |
Q |
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| T |
5218385 |
taattcaattatatgaaattaaacagaagatgtatattt |
5218423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 507
Target Start/End: Original strand, 5218192 - 5218235
Alignment:
| Q |
463 |
ataaaatattttgtaccatactttttgattgaatgtgtatctagt |
507 |
Q |
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| T |
5218192 |
ataaaatattttgtaccatac-ttctgattgaatgagtatctagt |
5218235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 40128190 - 40128066
Alignment:
| Q |
20 |
acaggttgatagtgcaaacaagtatgggatattattagagatggtacaggtgttgacagatcttgacctcatcatttccaagtcatacatttcctcagat |
119 |
Q |
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|||| ||||||| ||||||||| |||||||| |||| |||||||| |||| |||||||||||| ||||| || |||||||| ||||||||||| || ||| |
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| T |
40128190 |
acagattgatagagcaaacaagcatgggatactattggagatggtccaggcgttgacagatctagaccttataatttccaaatcatacatttcttctgat |
40128091 |
T |
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| Q |
120 |
ggtggatggtttatggacggtcagt |
144 |
Q |
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| T |
40128090 |
ggtggatggttaatggatggtcagt |
40128066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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