View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2269_low_20 (Length: 250)

Name: NF2269_low_20
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2269_low_20
NF2269_low_20
[»] chr7 (7 HSPs)
chr7 (1-244)||(18658407-18658650)
chr7 (1-233)||(21123128-21123360)
chr7 (1-233)||(21111296-21111528)
chr7 (1-233)||(21130256-21130488)
chr7 (1-229)||(21108337-21108562)
chr7 (1-229)||(21098718-21098943)
chr7 (1-64)||(29212999-29213062)
[»] chr4 (1 HSPs)
chr4 (1-230)||(39132248-39132477)
[»] chr3 (15 HSPs)
chr3 (1-229)||(26675300-26675525)
chr3 (1-103)||(26698635-26698737)
chr3 (1-103)||(26733798-26733900)
chr3 (1-58)||(26744079-26744136)
chr3 (1-103)||(26737023-26737125)
chr3 (1-52)||(26690556-26690607)
chr3 (1-52)||(26694717-26694768)
chr3 (1-52)||(26731867-26731918)
chr3 (1-103)||(26713787-26713889)
chr3 (151-229)||(47212075-47212153)
chr3 (1-58)||(26751004-26751061)
chr3 (138-229)||(26690690-26690781)
chr3 (138-229)||(26732001-26732092)
chr3 (138-229)||(26694851-26694942)
chr3 (1-64)||(47212237-47212300)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 18658650 - 18658407
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18658650 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 18658551  T
Q  101 gctgaaaacccgaaacagtcttaataataattcagaattctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18658550 gctgaaaacccgaaacagtcttaataataattcagaattctcaatgattagaggaacaagaggatatatggcccctgagtggattttcaatttgccaata 18658451  T
Q  201 acatctaaagtggatgtttatagttatggggttatattcttgga 244  Q
    ||||||||||||||||||||| ||||||||||| |||| |||||    
T  18658450 acatctaaagtggatgtttatggttatggggttgtattgttgga 18658407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21123360 - 21123128
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  21123360 aagaatgtatggagtggattttgcattgtgatataaagcctcaaaatatacttcttgattctaactttcaacccaagttagcagattttggattgtctaa 21123261  T
Q  101 gctgaaaacccgaaacagtcttaataataattcagaattctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaata 200  Q
    |||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  21123260 gctgaaaagcagaaacaatcttaataataattcagaattctcaatgattagaggaacaagaggatatatggcccctgaatggatttccaatttaccaata 21123161  T
Q  201 acatctaaagtggatgtttatagttatggggtt 233  Q
    |||||||||||||||||||||||||||||||||    
T  21123160 acatctaaagtggatgtttatagttatggggtt 21123128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21111528 - 21111296
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    |||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  21111528 aagaatgtctcgaatggatattgcattgtgatataaagcctcaaaatatacttcttgattctaactttcagcccaagttagcagattttggattgtctaa 21111429  T
Q  101 gctgaaaacccgaaacagtcttaataataattcagaattctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaata 200  Q
    |||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  21111428 gctgaaaagcagaaacaatcttaataataattcagaattctcaatgattagaggaacaagaggatatatggcccctgaatggatttccaattcaccaata 21111329  T
Q  201 acatctaaagtggatgtttatagttatggggtt 233  Q
    |||||||||||||||||||||||||||||||||    
T  21111328 acatctaaagtggatgtttatagttatggggtt 21111296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21130488 - 21130256
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| |||||    
T  21130488 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaatatacttcttgattctaactttcagcccaagttagccgattttggattgtctaa 21130389  T
Q  101 gctgaaaacccgaaacagtcttaataataattcagaattctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaata 200  Q
    |||  |||  ||||||| |||  |||||| ||||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  21130388 gctacaaaatcgaaacaatctcgataatagttcaggattctcaatgattagaggaacacgaggatatatggcacctgagtggattttcaatttaccaata 21130289  T
Q  201 acatctaaagtggatgtttatagttatggggtt 233  Q
    |||||||||||||||||||||||||| ||||||    
T  21130288 acatctaaagtggatgtttatagttacggggtt 21130256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 21108337 - 21108562
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||| || ||    
T  21108337 aagaatgtttggagtggattttgcattgtgatataaagccacaaaacatacttcttgattctaacttccagcccaagttagccgattttggattgtcaaa 21108436  T
Q  101 gctgaaaacccgaaacagtcttaataataattcagaattctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaata 200  Q
    |||| ||| | | ||||  ||   ||||||||||    |||||| |||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||    
T  21108437 gctgcaaaacaggaacaacct---taataattcatgcatctcaatgattagaggaacaagagggtatatggcacctgaatggattttcaatttgccaata 21108533  T
Q  201 acatctaaagtggatgtttatagttatgg 229  Q
    |||||||| ||||||||||||||||||||    
T  21108534 acatctaaggtggatgtttatagttatgg 21108562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 21098718 - 21098943
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||  | || |||||||| ||||||||||| |||||    
T  21098718 aagaatgtttggaatggattttacattgtgatataaagccgcaaaatatacttcttgattctaacttcgaacccaagttagcggattttggattgtctaa 21098817  T
Q  101 gctgaaaacccgaaacagtcttaataataattcagaattctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaata 200  Q
    |||| ||| | |||||| |||    || ||||||    | || | |||||||||||||||||| ||||||||||| || |||||||||||||| ||||||    
T  21098818 gctgcaaaacagaaacaatct---caacaattcaagtgtatctatgattagaggaacaagagggtatatggccccagaatggattttcaatttgccaata 21098914  T
Q  201 acatctaaagtggatgtttatagttatgg 229  Q
    ||||||||||| ||||||||||| |||||    
T  21098915 acatctaaagtagatgtttatagctatgg 21098943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29213062 - 29212999
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaa 64  Q
    |||| |||||||| |||||||||||||||||| | ||||| |||||||| ||| | ||||||||    
T  29213062 aagagtgtttggagtggattttgcattgtgatgtgaagccacaaaacattcttttggattctaa 29212999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 39132248 - 39132477
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||| |||||||| |||||    
T  39132248 aagaatgtttggagtggattttacattgtgatataaagcctcaaaatatacttcttgattctaactatcaacccaagttagcagactttggattgtctaa 39132347  T
Q  101 gctgaaaacccgaaacagtcttaataataattcagaattctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaata 200  Q
    ||||| ||   |||||| | | |||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  39132348 gctgagaaatagaaacaatgtcaatagtaattcagaattctcaatgattagaggaacaagaggatatatggctcctgaatgggttttcaatttaccaata 39132447  T
Q  201 acatctaaagtggatgtttatagttatggg 230  Q
    ||||||||||||||||||||||||||||||    
T  39132448 acatctaaagtggatgtttatagttatggg 39132477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26675525 - 26675300
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| | |  |  || ||  ||| ||||||||| || |||||    
T  26675525 aagaatgtttggagtggattttgcattgtgatataaagcctcaaaacatacttattgactctgattaccgacccaaaatagtagattttgggttgtctaa 26675426  T
Q  101 gctgaaaacccgaaacagtcttaataataattcagaattctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaata 200  Q
    |||   |    | |||| |||   ||||||||||   ||||||| ||| |||||||||||||| || ||||| ||||| ||||||||||| || |||||     
T  26675425 gctattacataggaacaatct---taataattcaagtttctcaaggatgagaggaacaagaggttacatggcacctgaatggattttcaacttgccaatc 26675329  T
Q  201 acatctaaagtggatgtttatagttatgg 229  Q
    || || || || |||||||||||||||||    
T  26675328 acttccaaggtagatgtttatagttatgg 26675300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26698737 - 26698635
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    |||| |||||||| |||||||||||||| ||||||||||| |||||||||||| |||| ||  | | ||| |||||| ||||||||||||| || |||||    
T  26698737 aagagtgtttggagtggattttgcattgcgatataaagccacaaaacatacttgttgactcggattatcaacctaaggtagcagattttggtttgtctaa 26698638  T
Q  101 gct 103  Q
    |||    
T  26698637 gct 26698635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26733900 - 26733798
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    |||| |||||||| |||||||||||||| ||||||||||| |||||||||||| |||| ||  | | ||| |||||| ||||||||||||| || |||||    
T  26733900 aagagtgtttggagtggattttgcattgcgatataaagccacaaaacatacttgttgactcggattatcaacctaaggtagcagattttggtttgtctaa 26733801  T
Q  101 gct 103  Q
    |||    
T  26733800 gct 26733798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26744136 - 26744079
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttga 58  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||    
T  26744136 aagaatgtttggagtggattttgcattgtgatataaagccgcaaaacatacttgttga 26744079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26737125 - 26737023
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    |||| |||||||| |||||||||||||| ||||||||||| |||||||||||| |||| ||| | | ||  |||||| | ||||||||||| || |||||    
T  26737125 aagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactctgattatcgacctaaggttgcagattttggtttgtctaa 26737026  T
Q  101 gct 103  Q
    |||    
T  26737025 gct 26737023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26690556 - 26690607
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatact 52  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  26690556 aagaatgtttggagtggattttgcattgtgacataaagccgcaaaacatact 26690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26694717 - 26694768
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatact 52  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  26694717 aagaatgtttggagtggattttgcattgtgacataaagccgcaaaacatact 26694768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26731867 - 26731918
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatact 52  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  26731867 aagaatgtttggagtggattttgcattgtgacataaagccgcaaaacatact 26731918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26713889 - 26713787
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaactttcaccctaagttagcagattttggattatctaa 100  Q
    |||| |||||||| |||||||||||||| ||||||||||| |||||||||||| |||| | | | | ||  |||||| | ||||||||||| || |||||    
T  26713889 aagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactatgattatcgacctaaggttgcagattttggtttgtctaa 26713790  T
Q  101 gct 103  Q
    |||    
T  26713789 gct 26713787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 47212153 - 47212075
Alignment:
Q  151 gaggaacaagaggatatatggcccctgagtggattttcaatttaccaataacatctaaagtggatgtttatagttatgg 229  Q
    ||||||||||||| || ||||| |||||||||||||| |||    |||||||||||||||| ||||||||||| |||||    
T  47212153 gaggaacaagaggttacatggcacctgagtggattttgaatcattcaataacatctaaagttgatgtttatagctatgg 47212075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26751061 - 26751004
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttga 58  Q
    ||||||||||||| |||||||||||||| |||||||| || |||||||||||| ||||    
T  26751061 aagaatgtttggagtggattttgcattgcgatataaaaccgcaaaacatacttgttga 26751004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 26690690 - 26690781
Alignment:
Q  138 ttctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaataacatctaaagtggatgtttatagttatgg 229  Q
    ||||||| ||| |||||||||||||| || ||||| ||||| ||||||||||| || ||||| || || || || ||||||||||| |||||    
T  26690690 ttctcaaggatgagaggaacaagaggttacatggcacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatagctatgg 26690781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 26732001 - 26732092
Alignment:
Q  138 ttctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaataacatctaaagtggatgtttatagttatgg 229  Q
    ||||||| ||| |||||||||||||| || ||||| ||||| ||||||||||| || ||||| || || || || ||||||||||| |||||    
T  26732001 ttctcaaggatgagaggaacaagaggttacatggcacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatagctatgg 26732092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 26694851 - 26694942
Alignment:
Q  138 ttctcaaagattagaggaacaagaggatatatggcccctgagtggattttcaatttaccaataacatctaaagtggatgtttatagttatgg 229  Q
    ||||||| ||| |||||||||||||| || ||||  ||||| ||||||||||| || ||||| || || || || ||||||||||| |||||    
T  26694851 ttctcaaggatgagaggaacaagaggttacatgggacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatagctatgg 26694942  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47212300 - 47212237
Alignment:
Q  1 aagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattctaa 64  Q
    |||| |||||||| |||||||||||||||||| | ||||| |||||||| ||| | ||||||||    
T  47212300 aagagtgtttggagtggattttgcattgtgatgtgaagccacaaaacattcttttggattctaa 47212237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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