View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_low_25 (Length: 235)
Name: NF2269_low_25
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 13884136 - 13883941
Alignment:
| Q |
22 |
caagatcttgtcacaagaaaattttgtgctaccactccttagaaacaaataactcatttgtcatttcattccatttttgtaaccaagttcctttgcctta |
121 |
Q |
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| T |
13884136 |
caagatcttgtcacaagaaaattttgtgctagcactccttagaaacaaataactc-tatgtcatttcattccatttttgtaaccaagttcctttgcctta |
13884038 |
T |
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| Q |
122 |
tgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactagctgctgttggagctcttccctgcttcgtttccctatgc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13884037 |
tgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactggctgctgttggagctcttccctgcttcgtttccctatgc |
13883941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 14024261 - 14024066
Alignment:
| Q |
22 |
caagatcttgtcacaagaaaattttgtgctaccactccttagaaacaaataactcatttgtcatttcattccatttttgtaaccaagttcctttgcctta |
121 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14024261 |
caagatcttgtcacaagaaaattttgtgctagcactccttagaaacaaataactc-tatgtcatttcattccatttttgtaaccaagttcctttgcctta |
14024163 |
T |
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| Q |
122 |
tgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactagctgctgttggagctcttccctgcttcgtttccctatgc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14024162 |
tgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactggctgctgttggagctcttccctgcttcgtttccctatgc |
14024066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 7684727 - 7684623
Alignment:
| Q |
114 |
ttgccttatgtcacatttacatgcagtcaagcatgaacatacctgagaatgctactaatttcactagctgctgttggagctcttccctgcttcgtttccc |
213 |
Q |
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||||||| | |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |
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| T |
7684727 |
ttgccttgtttcacatttacattcagtcaagcatgaccatacctgagaatgctactaatttcactggttgctgttggatctcttccctgcttcgtttccg |
7684628 |
T |
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| Q |
214 |
tatgc |
218 |
Q |
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||||| |
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| T |
7684627 |
tatgc |
7684623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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