View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_low_27 (Length: 215)
Name: NF2269_low_27
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 405346 - 405524
Alignment:
| Q |
19 |
atgtctttatattgagaatgttgttttgttgtttgattggaaaggggtttgaaggaatcaaattttgatagcttcttcaatgatgcaatagtgagttgta |
118 |
Q |
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| T |
405346 |
atgtctttatattgagaatgttgttttgttgtttgattggaaaggggtttgaaggactcaaattttgatagcttcttcaatgatgtaatagtgagttgta |
405445 |
T |
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| Q |
119 |
aaccatgggatagtggagtgcaagatgtgatagcaggttcatataattttgtgtgtgctcatggaagtcgtgatgtgag |
197 |
Q |
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| T |
405446 |
aaccatgggatagtggagtgcaagatgtgatagcaggttcatataattttgtgtgtgctcacggaagtcgtgatgtgag |
405524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 40 - 192
Target Start/End: Complemental strand, 399994 - 399842
Alignment:
| Q |
40 |
tgttttgttgtttgattggaaaggggtttgaaggaatcaaattttgatagcttcttcaatgatgcaatagtgagttgtaaaccatgggatagtggagtgc |
139 |
Q |
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| T |
399994 |
tgttgtgttgtttgattgaaaaggagtttgaaggaatcaaatgttgatagtttcttcaatgatgtaatggtgagttgtaaaccatgggatagtggagtgc |
399895 |
T |
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| Q |
140 |
aagatgtgatagcaggttcatataattttgtgtgtgctcatggaagtcgtgat |
192 |
Q |
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| T |
399894 |
aagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgtgat |
399842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 416520 - 416695
Alignment:
| Q |
22 |
tctttatattgagaatgttgttttgttgtttgattggaaaggggtttgaaggaatcaaattttgatagcttcttcaatgatgcaatagtgagttgtaaac |
121 |
Q |
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| T |
416520 |
tctttatattgagaatagtgtgttgttgtttgattgaaaaggggcttggaggaatcgaatgtggatagctttttcgatgatgttatggtgagttgtaaat |
416619 |
T |
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| Q |
122 |
catgggatagtggagtgcaagatgtgatagcaggttcatataattttgtgtgtgctcatggaagtcgtgatgtgag |
197 |
Q |
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| T |
416620 |
catggggtggtggagtgcaagacgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgtgacgtgag |
416695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 22517183 - 22517123
Alignment:
| Q |
137 |
tgcaagatgtgatagcaggttcatataattttgtgtgtgctcatggaagtcgtgatgtgag |
197 |
Q |
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| T |
22517183 |
tgcaagatgtgatagcaggttcatatatttttgtgtgtgctcatggaagtcgcgacgtgag |
22517123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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