View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_low_5 (Length: 498)
Name: NF2269_low_5
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 15 - 472
Target Start/End: Original strand, 7299890 - 7300347
Alignment:
| Q |
15 |
cataggaggagcattgggagaacaaacgttgctaagcttattgtacttttcaatgtcaaaattgtgaagcttcataaggcgcttctgcttcgagctgaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7299890 |
cataggaggagcattgggagaacaaacgttgctaagcttattgtacttttcaatgtcaaaattgtgaagcttcataaggcgcttctgcttcgagctgaaa |
7299989 |
T |
|
| Q |
115 |
cgagcttcgtaaaaacctctaaaagaaggttctttcccggtcttgaggaagaatgtataaccagtcatgaagtacatggatgttaaatagaagcaaattg |
214 |
Q |
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| T |
7299990 |
cgagcttcgtaaaaacctctaaaagaaggttctttcccggtcttgaggaagaatgtataaccagtcatgaagtacatggatgttaaatagaagcaaatgg |
7300089 |
T |
|
| Q |
215 |
gttccattacatcccaagtaagctcccaaaaggtgagtctcattaatactgctgttttcaccataacgaaacccaaacctccccaaagttcacgatcaac |
314 |
Q |
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| T |
7300090 |
gttccattacatcccaagtaagctcccaaaaggtgagtctcattaatactgctgttttcaccataatgaaacccaaacctccccaaagttcacgatcaac |
7300189 |
T |
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| Q |
315 |
caaggcttcggcttcttcatctatggccaacttctttttctccatttcttcatattcttttcttactgaatctgacacctttattcccggtgtaggaagc |
414 |
Q |
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| T |
7300190 |
caaggcttcggcttcttcatctatggccaacttctttttctccatttcttcatattcttttcttactgaatctgacacctttattcccggtgtaggaagc |
7300289 |
T |
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| Q |
415 |
agactttggagtgttttggctacctgtatcacaaaattttacagagtttgggtaaatc |
472 |
Q |
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| T |
7300290 |
agactttggagtgttttggctacctgtatcacaaaattttacagagtttgggtaaatc |
7300347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 257
Target Start/End: Complemental strand, 33313862 - 33313670
Alignment:
| Q |
65 |
caatgtcaaaattgtgaagcttcataaggcgcttctgcttcgagctgaaacgagcttcg-taaaaacctctaaaagaaggttctttcccggtcttgagga |
163 |
Q |
| |
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|||| |||||||||||||| ||||| | |||||||||| | ||||||||| |||| | || |||||| ||| ||||||||||| || |||| | |
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| T |
33313862 |
caatatcaaaattgtgaagtttcatcaattgcttctgcttagtgctgaaacg-gctttgatagaaaccttcaaaggaaggttcttttgatgttctgagaa |
33313764 |
T |
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| Q |
164 |
agaatgtataaccagtcatgaagtacatggatgttaaatagaagcaaattggttccattacatcccaagtaagctcccaaaaggtgagtctcat |
257 |
Q |
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| T |
33313763 |
agaatgtgtagccagccatgaagtacatagatgtcgcatagaagcatatgggctccattacatcccagttaagttcccaaaatgtgagcctcat |
33313670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 6698566 - 6698610
Alignment:
| Q |
213 |
tggttccattacatcccaagtaagctcccaaaaggtgagtctcat |
257 |
Q |
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| T |
6698566 |
tggttccataacatcccaacttagctcccaaaatgtgagtctcat |
6698610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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