View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_low_6 (Length: 470)
Name: NF2269_low_6
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 51169727 - 51169965
Alignment:
| Q |
18 |
aggatgtacataacattttcctaaaactttatagatatggaagtcgttatcttttaacaaacaccaggtagtgctgacatgcatgcatggtatgcaactt |
117 |
Q |
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| T |
51169727 |
aggatgtacataacattttcctaaaactttatagatatggaagtcgttatcttttaacaaacaccaggtagtgctgacatgcatgcatggtatgcaactt |
51169826 |
T |
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| Q |
118 |
ttaacaatccaatacccgcaagtctctcacatgcctcattagctgccaaacaatgttaatcacacagttaacgaacacttgatcgagaatcattcattac |
217 |
Q |
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| T |
51169827 |
ttaacaatccaatacccgcaagtctctcacatgcctcattagctgccaaacaatcttaatcacacagttaacgaacacttgatcgagaatcattcattac |
51169926 |
T |
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| Q |
218 |
ctatgataaaag----gtagtaatgttctaaaaccaccc |
252 |
Q |
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| T |
51169927 |
ctatgataaaaggtacgtagtaatgttctaaaaccaccc |
51169965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 330 - 461
Target Start/End: Original strand, 51170223 - 51170354
Alignment:
| Q |
330 |
cacttgcagaaaatcaaacatgaaaataactacattagaacgttgtgggatcccaatttattcgggttttcaaattattgaattcaacttgcatctattg |
429 |
Q |
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| T |
51170223 |
cacttgcagaaaatcaaacatgaaaataactacattagaacgttgtgggatcccaatttattcgggttttcaaattattgaattcaacttgcatctattg |
51170322 |
T |
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| Q |
430 |
gagtttacttttcttttgatggtacttcttct |
461 |
Q |
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| T |
51170323 |
gagtttacttttcttttgatggtacttcttct |
51170354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 322
Target Start/End: Original strand, 51169993 - 51170022
Alignment:
| Q |
293 |
ttggtgttatgcttctggcttagaagagtg |
322 |
Q |
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| T |
51169993 |
ttggtgttatgcttctggcttagaagagtg |
51170022 |
T |
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