View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2269_low_9 (Length: 415)
Name: NF2269_low_9
Description: NF2269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2269_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 11161767 - 11162159
Alignment:
| Q |
16 |
atggttagtatgatttaacgtatcattcgttattggtttcatgtagggtaaactgtgacaaaagtactaagataggaatttatgggaatgaaagatgtct |
115 |
Q |
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| T |
11161767 |
atggttagtatgatttaacgtatcattcgttattggtttcatgtagggtaaactgtgacaaaagtactaagataggaatttatgggaatgaaagatgtct |
11161866 |
T |
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| Q |
116 |
actatatagaattttgttagc---ctaatgatccaccataatcatgacctacgaaggatttgaagtttatggtcggtctatgtttttgagatttcctcta |
212 |
Q |
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| T |
11161867 |
actatatagaattttgttaacctgctaatgatccaccataatcatgacctacgaaggatttgaagtttatagtcagtctatgtttttgagatttcctcta |
11161966 |
T |
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| Q |
213 |
aaatgcaagtgcatgcgtcaaatttaatcatgacctggaaaatag----nnnnnnnnnnnnnngttatattggtcataatgtcacactagacgtgtgaa- |
307 |
Q |
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| T |
11161967 |
gaatgcaagtgcatgcgtcaaatttaatcatgacctggaaaatagttttttttttttttttttgtgatattggtcataatgtcccactagacgtgtgaaa |
11162066 |
T |
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| Q |
308 |
-atttaatcatgacctatcaattgtgattccctttgcgcatcaaac-aattacatggaggaaaaaatt-atgtgcttcaactatgggttcttt |
397 |
Q |
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| T |
11162067 |
tatttaatcatgacctatcaattgtgattccctttgcgcatcaaacaaattacatggaggaaaaaattgatgtgcttcaactatgggttcttt |
11162159 |
T |
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