View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_high_13 (Length: 372)
Name: NF2270_high_13
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 23312278 - 23311919
Alignment:
| Q |
14 |
ggaaagcaaaaacaatagtctattacaggacgaccgccgcaacggaacataatctagtacaaccnnnnnnnnnnnnnnnnnngcttaaaacagagcacgc |
113 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| |||||||||| || |
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| T |
23312278 |
ggaaagcaaaaccaatagtctattacaggacgaccgccgcagcagaacataatctagtacaaccaaaaagaaaaagaaaaaagcttgaaacagagcaggc |
23312179 |
T |
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| Q |
114 |
gaacacagtccctcaagcggcacagaccgatgaaccttctgatcaggataaacattggaacggtccaccttgacaggagcctgaaataactccacttgga |
213 |
Q |
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|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
23312178 |
gaacacagtccctcaagcggcacaaatcgatgaacctcttgatcaggataaacattggaacggttaaccttgacaggatcctgaaagaactccacttgga |
23312079 |
T |
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| Q |
214 |
tgagggcatcctcaaagccctacccccaacactgttccgcaagggccacaacctcttctgcccactctcattgaagcaaagcctccacctccg-cgaggt |
312 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23312078 |
tgagggcatccttaaagccctacccccaacactgttccgcaagggccacaacctcttctgcccactctcattgaagcaaagcctccacctccgccgaggt |
23311979 |
T |
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| Q |
313 |
cttgctaaccaaagcctgtttcaaagcgagtgcttccttacccatcggtactttagccgc |
372 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23311978 |
cttgctaaccaaaacctgtttcaaagcgagtgcttccttacccatcggtactttagccgc |
23311919 |
T |
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