View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_high_14 (Length: 365)
Name: NF2270_high_14
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 39494546 - 39494210
Alignment:
| Q |
17 |
tgaaggacgagggaaagaggcagagtcaaaagacaagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggacgcatgaag |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39494546 |
tgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttgacggacgcatgaag |
39494447 |
T |
|
| Q |
117 |
ggttttgagtcaatgccatgtaaatttgatggaaaactgatgcggcctgagttaagagagaaaaaatatgatgctttaatagaaccagaattgggtaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39494446 |
ggttttgagtcaatgccatgtaaatttgatggaaaactgaagcggcctgagttaagagagaaaaaatatgatgctttaatagaaccagaattgggtaaat |
39494347 |
T |
|
| Q |
217 |
gttctttttcattgcaaccatttcttttattattgttgatctttttaattacctgatctatctaactttttaaaaacatctttaatcattttaacgttga |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39494346 |
gttctttttcattgcaaccgtttcttttattattgttgatctttttaattacctgatctatctaacttttt-aaaacatctttaatcattttaacgttga |
39494248 |
T |
|
| Q |
317 |
atgtcttagtcaagttgaaaatcttcactagttttcat |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
39494247 |
atgtcttagtcaagttgaaaatcttcactagttttcat |
39494210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 39426667 - 39426481
Alignment:
| Q |
17 |
tgaaggacgagggaaagaggcagagtcaaaagacaagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggacgcatgaag |
116 |
Q |
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|||||||| ||||||||| | || ||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
39426667 |
tgaaggacaggggaaagagactgaatcagaagacaagaacttcaaagtacacgagaaggagctcaagccaaaagagaagcagtttgagggacgcatggag |
39426568 |
T |
|
| Q |
117 |
ggttttgagtcaatgccatgtaaatttgatggaaaactgatgcggcctgagttaagagagaaaaaatatgatgctttaatagaacca |
203 |
Q |
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||| ||||||||| |||| || ||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39426567 |
ggtcttgagtcaaagccaagtgaatttgatggacagctggagcggcctgagttaagagagaaacaatatgatgctttaatagaacca |
39426481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 39130597 - 39130780
Alignment:
| Q |
20 |
aggacgagggaaagaggcagagtcaaaagacaagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggacgcatgaagggt |
119 |
Q |
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|||||||||||||||| |||||||| |||||||||| ||||||| ||| ||||||| || ||||||||||||||||||||||| ||| |||||||| || |
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| T |
39130597 |
aggacgagggaaagagccagagtcagaagacaagaaattcaaagtacatttgaaggatcttaagccaaaagagaagcagtttgagggatgcatgaagagt |
39130696 |
T |
|
| Q |
120 |
tttgagtcaatgccatgtaaatttgatggaaaactgatgcggcctgagttaagagagaaaaaatatgatgctttaatagaacca |
203 |
Q |
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||||||||| |||| |||||||| ||||||||| || ||||||||| |||||||||||| |||||||| |||||||||||||| |
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| T |
39130697 |
cttgagtcaaagccaagtaaatttcatggaaaaccgaagcggcctgacttaagagagaaacaatatgattctttaatagaacca |
39130780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 223 - 335
Target Start/End: Original strand, 39130837 - 39130949
Alignment:
| Q |
223 |
tttcattgcaaccatttcttttattattgttgatctttttaattacctgatctatctaactttttaaaaacatctttaatcattttaacgttgaatgtct |
322 |
Q |
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||||||| ||||||||||||| | | ||||||| |||||||||||| |||||| |||| |||||||| ||||||||||||||||||| |||| | |||| |
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| T |
39130837 |
tttcatttcaaccatttctttcaatgttgttgacatttttaattaccagatctacctaattttttaaagacatctttaatcattttaatgttgtaggtct |
39130936 |
T |
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| Q |
323 |
tagtcaagttgaa |
335 |
Q |
| |
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||||||||||||| |
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| T |
39130937 |
tagtcaagttgaa |
39130949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 39426395 - 39426293
Alignment:
| Q |
249 |
ttgttgatctttttaattacctgatctatctaactttttaaaaacatctttaatcattttaacgttgaatgtcttagtcaagttgaaaatcttcactagt |
348 |
Q |
| |
|
|||||||| | |||||||||||||||| ||| || |||||||||| ||||||||| |||| ||| ||||||||||||| |||||||||||||||||| |
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| T |
39426395 |
ttgttgatatctttaattacctgatctgcctagtttattaaaaacatgtttaatcatgttaatcttgtatgtcttagtcaacttgaaaatcttcactagt |
39426296 |
T |
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| Q |
349 |
ttt |
351 |
Q |
| |
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||| |
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| T |
39426295 |
ttt |
39426293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 39192522 - 39192453
Alignment:
| Q |
39 |
gagtcaaaagacaagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggac |
108 |
Q |
| |
|
||||||||||| || |||||||||||| | |||||||||||||| |||||| ||||||||||| |||| |
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| T |
39192522 |
gagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggac |
39192453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 39198202 - 39198133
Alignment:
| Q |
39 |
gagtcaaaagacaagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggac |
108 |
Q |
| |
|
||||||||||| || |||||||||||| | |||||||||||||| |||||| ||||||||||| |||| |
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| T |
39198202 |
gagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggac |
39198133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 39124729 - 39124764
Alignment:
| Q |
168 |
ttaagagagaaaaaatatgatgctttaatagaacca |
203 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
39124729 |
ttaagagagaaacaatatgatgctttaatagaacca |
39124764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 39124621 - 39124706
Alignment:
| Q |
18 |
gaaggacgagggaaagaggcagagtcaaaagacaagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttga |
103 |
Q |
| |
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||||||||| |||||||| |||||| |||| ||| ||||||||| ||| | |||||||| |||||| ||||||||||||||| |
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| T |
39124621 |
gaaggacgatggaaagagctcgagtcagaagagaaggagttcaaagtacatgctaaggagcttgagccaatagagaagcagtttga |
39124706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 39143644 - 39143725
Alignment:
| Q |
17 |
tgaaggacgagggaaagaggcagagtcaaaagacaagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcag |
98 |
Q |
| |
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||||||||||||||||||| ||||||| || |||| |||||||| | | | ||||| |||||| ||||||||||||||| |
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| T |
39143644 |
tgaaggacgagggaaagagctcaagtcaaacgataagatgttcaaagtagatgcgaaggtgctcaatccaaaagagaagcag |
39143725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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