View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2270_high_2 (Length: 619)
Name: NF2270_high_2
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 44852082 - 44851472
Alignment:
| Q |
1 |
tcttctcaccacagcatagctatgaactacacgcattcatgtttgtgaactatccataacaaaactttaaattgcagtcgcagttacttcataattttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44852082 |
tcttctcaccacagcatagctatgaactacacgcattcatgtttgtgaactatccataacaaaactttaaattgcagtcgcagttacttcataattttta |
44851983 |
T |
|
| Q |
101 |
atactattgatagtca----taagt---gtgtatgatgtaatctcaactgctgttgcattagcgcatatattgcgtgtaagtatacaaagggtagggacg |
193 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851982 |
atactattgatagtcactgttaagtcatgtgtatgatgtaatctcaactgctgttgcattagcgcatatattgcgtgtaagtatacaaagggtagggacg |
44851883 |
T |
|
| Q |
194 |
tagtattgcgtgtcagtaagggatggatataaataaaggtgggaaatagaaagatgccaaatttaaaaactacctgaaattgatatgtgggatgtttgta |
293 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851882 |
tagtattgcgtgtcagtatgggatggatataaataaaggtgggaaatagaaagatgccaaatttaaaaactacctgaaattgatatgtgggatgtttgta |
44851783 |
T |
|
| Q |
294 |
gcatgcgatatatgaacaatacattttgttacattcttctagacaacagacacatnnnnnnnnnncacttgaatcaatcaagaaggggcaacaggaatcc |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44851782 |
gcatgcgatatatgaacaatacattttgttacattcttctagacaacagacacataaaaaa----------aatcaatcaagaaggggcaacaggaatcc |
44851693 |
T |
|
| Q |
394 |
tttcatcagaaaaaatgctcctcgtaaagtgtaaaatagatgaagacataggtaactcctcaagctcatcgaaaaaatcaaattcttctgatttagatgc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851692 |
tttcatcagaaaaaatgctcctcgtaaagtgtaaaatagatgaagacataggtaactcctcaagctcatcgaaaaaatcaaattcttctgatttagatgc |
44851593 |
T |
|
| Q |
494 |
tgacatattctttaactgtgcatagcagagtggctcttcctctaagagaagatctattttgtcaatatggcttttttctatatttagtttgaaaggatct |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851592 |
tgacatattctttaactgtgcatagcagagtggctcttcctctaagagaagatctattttgtcaatatggcttttttctatatttagtttgaaaggatct |
44851493 |
T |
|
| Q |
594 |
tcttggtctatgatgatgtcc |
614 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
44851492 |
tcttggtctataatgatgtcc |
44851472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University