View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_high_22 (Length: 280)
Name: NF2270_high_22
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 102 - 280
Target Start/End: Original strand, 5113186 - 5113361
Alignment:
| Q |
102 |
cactggtaggggtttgattattcctgaatgacaagaggctttctggttttgataaggaaaagaattaaagagcttgatgcagagttttaccgcaaattta |
201 |
Q |
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| T |
5113186 |
cactggtaggggtttgattattcctgaatgacaagaggatttctggttttgaatt---aaagaattaaagagcttgatgcagagttttaccgcaaattta |
5113282 |
T |
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| Q |
202 |
tcttggcggacaagttcctgcctatacgaaggcaagaataaatattatctttcttcctttttgtgcaatgcatagtttt |
280 |
Q |
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| T |
5113283 |
tcttggcggacaagttcctgcctatacgaaggcatgaataaatattatctttcttccttttcgtgcaatgcatagtttt |
5113361 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 5113122 - 5113196
Alignment:
| Q |
9 |
tcgcaatacatattgttggnnnnnnnaatggttgatttgaataattgtgatggttttcagggagcactggtaggg |
83 |
Q |
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| T |
5113122 |
tcgcaatacatattgttggtttttttaatggttgatttgaataattgtgatgattttcagggagcactggtaggg |
5113196 |
T |
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