View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2270_high_23 (Length: 271)

Name: NF2270_high_23
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2270_high_23
NF2270_high_23
[»] chr2 (28 HSPs)
chr2 (18-162)||(8025119-8025265)
chr2 (178-261)||(27191003-27191086)
chr2 (178-261)||(27840817-27840900)
chr2 (178-261)||(3390784-3390867)
chr2 (178-261)||(3465290-3465373)
chr2 (178-261)||(6090250-6090333)
chr2 (178-261)||(16720518-16720601)
chr2 (178-261)||(25771806-25771889)
chr2 (178-261)||(41177219-41177302)
chr2 (178-261)||(43567234-43567316)
chr2 (178-261)||(3603346-3603429)
chr2 (178-261)||(9207026-9207109)
chr2 (178-261)||(27023809-27023892)
chr2 (178-261)||(44167382-44167464)
chr2 (179-261)||(37884014-37884096)
chr2 (178-254)||(11550336-11550412)
chr2 (178-261)||(15920235-15920318)
chr2 (178-260)||(18141151-18141233)
chr2 (178-256)||(39481193-39481271)
chr2 (178-258)||(38822436-38822514)
chr2 (178-234)||(13548575-13548631)
chr2 (178-261)||(36508290-36508376)
chr2 (186-261)||(26491662-26491737)
chr2 (230-261)||(41797971-41798002)
chr2 (178-240)||(25516906-25516968)
chr2 (178-256)||(25622714-25622792)
chr2 (181-261)||(12366229-12366309)
chr2 (178-258)||(13268936-13269016)
[»] chr7 (24 HSPs)
chr7 (178-261)||(49167286-49167369)
chr7 (178-261)||(7986253-7986336)
chr7 (178-257)||(18754060-18754139)
chr7 (178-258)||(134815-134895)
chr7 (178-261)||(24470765-24470849)
chr7 (178-261)||(24475713-24475797)
chr7 (178-261)||(40477068-40477151)
chr7 (178-261)||(8611293-8611376)
chr7 (178-261)||(26017328-26017411)
chr7 (178-261)||(47156746-47156829)
chr7 (178-259)||(35362778-35362859)
chr7 (189-261)||(29804360-29804432)
chr7 (178-261)||(19895354-19895437)
chr7 (178-261)||(21328968-21329051)
chr7 (178-261)||(28015718-28015801)
chr7 (178-261)||(43806820-43806903)
chr7 (186-256)||(772809-772879)
chr7 (95-141)||(28426870-28426916)
chr7 (178-258)||(11002207-11002286)
chr7 (186-261)||(8319676-8319751)
chr7 (230-261)||(10094816-10094847)
chr7 (178-261)||(30992494-30992576)
chr7 (178-256)||(15123673-15123751)
chr7 (189-258)||(21552136-21552205)
[»] chr4 (26 HSPs)
chr4 (178-261)||(53903940-53904023)
chr4 (178-261)||(54420410-54420493)
chr4 (178-261)||(4634644-4634727)
chr4 (178-261)||(9662214-9662297)
chr4 (178-261)||(14542182-14542265)
chr4 (178-261)||(34668547-34668630)
chr4 (178-261)||(41486935-41487018)
chr4 (178-261)||(29473998-29474081)
chr4 (201-261)||(30469816-30469876)
chr4 (178-261)||(6408806-6408889)
chr4 (178-261)||(7242456-7242539)
chr4 (178-261)||(23002603-23002685)
chr4 (178-261)||(23067518-23067601)
chr4 (189-256)||(50002874-50002941)
chr4 (178-260)||(38434960-38435042)
chr4 (178-246)||(9549808-9549876)
chr4 (178-258)||(20961812-20961892)
chr4 (178-261)||(30416297-30416381)
chr4 (178-261)||(42972399-42972483)
chr4 (230-261)||(39837970-39838001)
chr4 (213-259)||(40913470-40913516)
chr4 (224-261)||(23926402-23926439)
chr4 (220-261)||(52555452-52555493)
chr4 (178-242)||(23964050-23964114)
chr4 (95-127)||(46309819-46309851)
chr4 (189-261)||(50981395-50981467)
[»] chr8 (13 HSPs)
chr8 (178-261)||(8054478-8054561)
chr8 (178-261)||(9993027-9993110)
chr8 (178-261)||(41996904-41996987)
chr8 (178-261)||(5457432-5457515)
chr8 (178-261)||(16996559-16996642)
chr8 (178-261)||(44295677-44295760)
chr8 (178-259)||(5989976-5990057)
chr8 (178-256)||(32413156-32413234)
chr8 (186-259)||(16937950-16938023)
chr8 (178-260)||(5328311-5328391)
chr8 (178-261)||(32104507-32104590)
chr8 (178-258)||(37129344-37129425)
chr8 (197-261)||(27534101-27534165)
[»] chr1 (29 HSPs)
chr1 (178-261)||(15276116-15276199)
chr1 (178-261)||(15698559-15698642)
chr1 (178-261)||(38644467-38644550)
chr1 (178-261)||(38646945-38647028)
chr1 (178-261)||(49652196-49652279)
chr1 (181-261)||(630457-630537)
chr1 (181-261)||(5844492-5844572)
chr1 (178-261)||(14716946-14717029)
chr1 (186-261)||(45659375-45659450)
chr1 (178-256)||(23257454-23257532)
chr1 (178-259)||(13969310-13969391)
chr1 (178-258)||(8893656-8893736)
chr1 (178-258)||(44513672-44513752)
chr1 (178-261)||(12967403-12967486)
chr1 (178-261)||(18343979-18344062)
chr1 (178-261)||(22344582-22344665)
chr1 (178-261)||(33703180-33703263)
chr1 (178-261)||(44562419-44562502)
chr1 (178-256)||(34659311-34659389)
chr1 (178-259)||(33177268-33177349)
chr1 (178-261)||(11121337-11121420)
chr1 (195-258)||(13691450-13691513)
chr1 (178-261)||(28213414-28213497)
chr1 (97-143)||(23410658-23410704)
chr1 (178-256)||(26771472-26771550)
chr1 (178-259)||(30853617-30853697)
chr1 (107-144)||(37138677-37138714)
chr1 (186-258)||(22031780-22031852)
chr1 (189-261)||(34567042-34567114)
[»] chr6 (13 HSPs)
chr6 (184-258)||(11426309-11426383)
chr6 (178-256)||(20845379-20845457)
chr6 (178-261)||(16913689-16913772)
chr6 (187-261)||(8632875-8632949)
chr6 (179-261)||(12576152-12576234)
chr6 (178-261)||(13233778-13233861)
chr6 (178-261)||(31748318-31748401)
chr6 (178-261)||(548542-548625)
chr6 (178-261)||(23843094-23843177)
chr6 (178-261)||(4921564-4921647)
chr6 (230-261)||(15589839-15589870)
chr6 (178-259)||(20496556-20496637)
chr6 (224-261)||(34020964-34021001)
[»] chr5 (16 HSPs)
chr5 (178-256)||(28618968-28619046)
chr5 (178-261)||(6886848-6886931)
chr5 (178-261)||(10923804-10923887)
chr5 (178-261)||(31646190-31646273)
chr5 (178-258)||(4070914-4070994)
chr5 (181-261)||(33486242-33486322)
chr5 (178-261)||(5378663-5378746)
chr5 (178-261)||(35906630-35906713)
chr5 (178-261)||(19645707-19645789)
chr5 (178-256)||(15710910-15710988)
chr5 (186-260)||(17325342-17325416)
chr5 (189-261)||(29310035-29310107)
chr5 (230-261)||(6681591-6681622)
chr5 (178-261)||(14910346-14910429)
chr5 (187-256)||(34874216-34874285)
chr5 (189-261)||(40564838-40564910)
[»] chr3 (19 HSPs)
chr3 (178-261)||(3088334-3088417)
chr3 (178-261)||(10977604-10977687)
chr3 (178-261)||(43030044-43030127)
chr3 (178-261)||(50520144-50520227)
chr3 (178-261)||(1165066-1165149)
chr3 (178-261)||(21803892-21803975)
chr3 (178-260)||(45664583-45664665)
chr3 (177-261)||(22286421-22286504)
chr3 (178-261)||(47914263-47914346)
chr3 (178-256)||(20200728-20200806)
chr3 (178-256)||(20202910-20202988)
chr3 (178-260)||(33977595-33977677)
chr3 (183-261)||(46926765-46926843)
chr3 (178-254)||(11846916-11846992)
chr3 (178-261)||(14740364-14740447)
chr3 (195-258)||(28994996-28995059)
chr3 (186-261)||(43839195-43839270)
chr3 (213-257)||(1806164-1806208)
chr3 (95-127)||(27070461-27070493)
[»] scaffold0722 (1 HSPs)
scaffold0722 (178-261)||(5196-5278)
[»] scaffold0432 (1 HSPs)
scaffold0432 (178-261)||(2104-2187)
[»] scaffold0024 (1 HSPs)
scaffold0024 (178-261)||(36885-36968)
[»] scaffold0316 (1 HSPs)
scaffold0316 (198-261)||(11893-11956)
[»] scaffold0045 (1 HSPs)
scaffold0045 (179-261)||(1592-1674)
[»] scaffold0009 (1 HSPs)
scaffold0009 (189-255)||(105413-105479)
[»] scaffold1827 (1 HSPs)
scaffold1827 (220-261)||(777-818)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 8025265 - 8025119
Alignment:
Q  18 ctaatatatcccaataaaactatttgaaggatttttcttttattgaggggtaaacataaatttctttgaggataaat--aattaaagattgtggatcttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  8025265 ctaatatatcccaataaaactatttgaaggatttttcttttattgaggggtaaacataaatttctttgaggataaatgcaattaaagattgtggatcttt 8025166  T
Q  116 cattattcttgacaattgatcatatgtgaaaatatttaatttggtgg 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8025165 cattattcttgacaattgatcatatgtgaaaatatttaatttggtgg 8025119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 27191003 - 27191086
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||| ||||||||||| ||||| ||||||||| | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  27191003 aaattaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 27191086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 27840817 - 27840900
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||| ||||||||||| ||||| ||||||||| | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  27840817 aaattaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 27840900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 3390867 - 3390784
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | ||||||||||||||||||| ||||||| ||||    
T  3390867 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaatttgctaaaaacaaaaatgatgaatatgtg 3390784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 3465373 - 3465290
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||| || ||||| ||||||||| | |||||| ||||||| | ||||||||||||| ||||||||| ||||||||    
T  3465373 aaataaaagatatccattcattcaaattgaaagagtacatcgatataatgcaaatttgctaaaaataaaaaggataaatctgtg 3465290  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 6090333 - 6090250
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||| ||| ||||| ||||||||| | |||||||||||||| | |||| ||| |||||||||||||||||| ||||    
T  6090333 aaataaaagatactcattcattcaaattgaaagagtacatcaatataatgcaaattcgctcaaaacaaaaaggatgaatttgtg 6090250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 16720518 - 16720601
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| |||| |||||||| |||||||| | ||||||| | ||||||||||||| ||||||||||||| ||||    
T  16720518 aaataaatgatattcattcatgtaaattgatataatacaacgatataatgcaaatttgctaaaaataaaaaggatgaatttgtg 16720601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 25771889 - 25771806
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  25771889 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatatgtg 25771806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 41177302 - 41177219
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||| | || ||| ||||||| | |||| | |||||||||||||||||||||||||    
T  41177302 aaataaaagatattcattcattcaaattgaaagagtaaatcgatataatgcaaattcgttaaaaacaaaaaggatgaatctgtg 41177219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 43567316 - 43567234
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||| | |||||||||||| | | |||| ||||||||| |||||||||||||||||    
T  43567316 aaataaaagatattcattcattcaaattgaaagagtacatcaatatattgcaaattcgctaaaaac-aaaaggatgaatctgtg 43567234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 3603429 - 3603346
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||||| ||||| ||||| | ||| ||| || ||||||| | |||| |||||||||||||||||||||||||||    
T  3603429 aaataaaaaatattcattcattcaaatttatatagtacttcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 3603346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 9207026 - 9207109
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| || ||||| |||||| |||||| | | |||||| ||||||| | ||||||||||||||||||||||||||| ||||    
T  9207026 aaataaatgacattcattcatttgaattgatagagtacatcgatataatgcaaatttgctaaaaacaaaaaggatgaatatgtg 9207109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 27023809 - 27023892
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||| | ||||| |||| || | | |||||| ||||||||| |||| |||||||||||||||||||||| ||||    
T  27023809 aaataaaagatatttattcattcaaatcgatagagtacatcgatataatacaaattcgctaaaaacaaaaaggatgaatatgtg 27023892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 44167382 - 44167464
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| || |||||| | |||||| ||||||| | |||| |||||||||||||||||| ||||||||    
T  44167382 aaataaaagatattcattcattcaa-ttgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaaggataaatctgtg 44167464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 37884096 - 37884014
Alignment:
Q  179 aataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||| |||||||| ||||| ||||||| ||| |||||||||| |||   |||| |||||||||||||| ||||||||||||    
T  37884096 aataaacgatattcattcattcaaattgatatagtacatcaatacaatgaaaattcgctaaaaacaaaaatgatgaatctgtg 37884014  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 11550336 - 11550412
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatga 254  Q
    ||||||| |||||||| ||||| ||||||| | | |||||||||| ||| | |||| ||||||||||||||||||||    
T  11550336 aaataaatgatattcattcattcaaattgatagagtacatcaatacaatgcaaattcgctaaaaacaaaaaggatga 11550412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 15920318 - 15920235
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||| ||||| ||||  ||||||||||||| ||||||||||||    
T  15920318 aaataaatgatattcattcattcaaattgatagagtacatcgatacaatacaaattcactaaaaacaaaaaagatgaatctgtg 15920235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 18141151 - 18141233
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgt 260  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| || |||| | ||||||||||||||||||| ||| |||||||    
T  18141151 aaataaatgatattcattcattcaaattgatagagtacatcgatgtaatgcaaatttgctaaaaacaaaaatgattaatctgt 18141233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 39481193 - 39481271
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||||| |||||||| ||||| ||||| | | | ||||||| |||||| | |||| ||||||||||||||||||||||    
T  39481193 aaataaatgatattcattcattcaaattaatacattacatcagtataatgcaaattcgctaaaaacaaaaaggatgaat 39481271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 38822514 - 38822436
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    |||||||||||||||| ||||| |||||  || | |||||  ||||||| | |||| ||||||||||||||||||||||||    
T  38822514 aaataaaagatattcattcattcaaatt--aagagtacattgatataatgcaaattcgctaaaaacaaaaaggatgaatct 38822436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 13548575 - 13548631
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaattt 234  Q
    ||||||| |||||||| ||||||||||||| ||| |||||| ||| |||||||||||    
T  13548575 aaataaacgatattcattcatttaaattgatatagtacatcgatacaatacgaattt 13548631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 36508376 - 36508290
Alignment:
Q  178 aaataaaagatattcagtcattta---aattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| |   ||||| || | |||||| ||||||| | |||| ||||||| |||||||||||||||||||    
T  36508376 aaataaaagatattcattcattcattcaattgtaagagtacatcgatataatgcaaattcgctaaaagcaaaaaggatgaatctgtg 36508290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 26491737 - 26491662
Alignment:
Q  186 gatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||| ||||||| | |||||||| ||| |||   |||| |||||||||||||||||||||| ||||    
T  26491737 gatattcattcattcaaattgatagaatacatcgatacaatgaaaattcgctaaaaacaaaaaggatgaatttgtg 26491662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 261
Target Start/End: Complemental strand, 41798002 - 41797971
Alignment:
Q  230 aatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||||||||||||||||||||||    
T  41798002 aatttgctaaaaacaaaaaggatgaatctgtg 41797971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 25516968 - 25516906
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaa 240  Q
    |||||||||||||||| ||||| ||||||||| | |||||| ||||||| | ||| |||||||    
T  25516968 aaataaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaatatgctaaa 25516906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 25622714 - 25622792
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||||| || ||||| ||||||||||||| | | |||||| ||| |||   |||| ||||||||||||||||||||||    
T  25622714 aaataaatgacattcattcatttaaattgatagagtacatcgatacaatgtaaattcgctaaaaacaaaaaggatgaat 25622792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 12366309 - 12366229
Alignment:
Q  181 taaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||| |||||||| ||||| ||||||| | | |||||| ||| |||   |||| |||||||||||||||||||||| ||||    
T  12366309 taaatgatattcattcattcaaattgatagagtacatcgatacaatgaaaattcgctaaaaacaaaaaggatgaatatgtg 12366229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 13269016 - 13268936
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    ||||||| |||||||| ||||| ||||||| | | |||||  ||| ||| | |||| |||||||||||||| |||||||||    
T  13269016 aaataaatgatattcattcattcaaattgatagagtacattgatacaatgcaaattcgctaaaaacaaaaatgatgaatct 13268936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 49167369 - 49167286
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||| | || ||||||||||| | |||| |||||||||||||||||||||||||||    
T  49167369 aaataaaagatattcattcattcaaattgaaagagtatatcaatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 49167286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 7986336 - 7986253
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | || ||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  7986336 aaataaaagatattcattcattcaaattgatagagtagatcgatataatacaaatttgctaaaaacaaaaaagatgaatctgtg 7986253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 18754139 - 18754060
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatc 257  Q
    |||||||||||||||| ||||| ||||||||| | |||||| ||||||| | |||| |||||||||||||||||||||||    
T  18754139 aaataaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatc 18754060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 134815 - 134895
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    |||||||||||||||| ||||| ||||||| | | |||||| |||||||   |||||||||||||||||||||||||||||    
T  134815 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgtaaatttgctaaaaacaaaaaggatgaatct 134895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 24470849 - 24470765
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaa-caaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||||| | |||| ||||||||  ||||||||||||||||||    
T  24470849 aaataaaagatattcattcatttaaattgaaagagtacatcgatataatgcaaattcgctaaaaataaaaaaggatgaatctgtg 24470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 24475797 - 24475713
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaa-caaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||||||||||||| | |||||| ||||||| | |||| ||||||||  ||||||||||||||||||    
T  24475797 aaataaaagatattcattcatttaaattgaaagagtacatcgatataatgcaaattcgctaaaaataaaaaaggatgaatctgtg 24475713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 40477151 - 40477068
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||| |  ||||||||||||| | ||||  || |||||||||||||||||||||||    
T  40477151 aaataaaagatattcattcattcaaattgaaagagaacatcaatataatgcaaattcacttaaaacaaaaaggatgaatctgtg 40477068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 8611293 - 8611376
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||| | |||||| ||||||| | |||  ||||| |||||||||||||||| ||||    
T  8611293 aaataaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaatacgctaagaacaaaaaggatgaatatgtg 8611376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 26017328 - 26017411
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||||||||  ||||  ||||||||||||||||||||||||||    
T  26017328 aaataaatgatattcattcattcaaattgatagagtacatcgatataatataaattcactaaaaacaaaaaggatgaatctgtg 26017411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 47156829 - 47156746
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||| ||| | |||||| ||||||| | |||| ||||||||||||||| |||||| ||||    
T  47156829 aaataaaagatattcattcattcaaattaaaagagtacatcgatataatgcaaattcgctaaaaacaaaaagaatgaatttgtg 47156746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 35362778 - 35362859
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctg 259  Q
    |||| ||||||||||| ||||||||||||| | | || ||| ||| ||| | |||| |||||||||||||||||||||||||    
T  35362778 aaattaaagatattcattcatttaaattgatagagtatatcgatacaatgcaaattcgctaaaaacaaaaaggatgaatctg 35362859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 29804360 - 29804432
Alignment:
Q  189 attcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||| ||||| ||||||| | | |||||| ||||||||| |||| |||||||||||||| ||||||||||||    
T  29804360 attcattcattcaaattgatagagtacatcgatataatacaaattcgctaaaaacaaaaatgatgaatctgtg 29804432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 19895354 - 19895437
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||||| ||||| ||||||| | | |||||  ||||||| | |||| |||||||||||||||||||||| ||||    
T  19895354 aaataaaaaatattcattcattcaaattgatagagtacattgatataatgcaaattcgctaaaaacaaaaaggatgaatatgtg 19895437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 21328968 - 21329051
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| || ||||| ||||| ||||||| | | |||||| ||  ||||| |||| |||||||||||||||||||||||||||    
T  21328968 aaataaaggacattcattcattcaaattgatagagtacatcgatgcaatacaaattcgctaaaaacaaaaaggatgaatctgtg 21329051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 28015801 - 28015718
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||  | | |||||| ||| |||   |||| |||||||||||||||||||||||||||    
T  28015801 aaataaaagatattcattcattcaaattggtagagtacatcgatacaatgaaaattcgctaaaaacaaaaaggatgaatctgtg 28015718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 43806820 - 43806903
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||  ||||||| ||||||||||||| | | |||||| ||||||| | |||| ||||||||||| || ||||||||||||    
T  43806820 aaataaattatattcattcatttaaattgatagagtacatcgatataatgcaaattcgctaaaaacaagaatgatgaatctgtg 43806903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 772879 - 772809
Alignment:
Q  186 gatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    |||||||| ||||||||||||| | | |||||| ||| ||| | |||| ||||||||||||||||||||||    
T  772879 gatattcattcatttaaattgatagagtacatcgatacaatgcaaattcgctaaaaacaaaaaggatgaat 772809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 28426916 - 28426870
Alignment:
Q  95 aattaaagattgtggatctttcattattcttgacaattgatcatatg 141  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  28426916 aattaaagattgtggttctttcattatttttgaccattgatcatatg 28426870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 11002286 - 11002207
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    |||||||| ||||||| ||||| ||||| ||| | |||||| ||||||| | |||| |||||||| |||||||||||||||    
T  11002286 aaataaaa-atattcattcattcaaattaaaagagtacatcgatataatgcaaattcgctaaaaataaaaaggatgaatct 11002207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 8319751 - 8319676
Alignment:
Q  186 gatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||||||||||| | | |||||| ||||| | | |||| |||||||||||||| ||||||| ||||    
T  8319751 gatattcattcatttaaattgatagagtacatcgatatagtgcaaattcgctaaaaacaaaaatgatgaatttgtg 8319676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 261
Target Start/End: Complemental strand, 10094847 - 10094816
Alignment:
Q  230 aatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||||||||||||||||||||||    
T  10094847 aatttgctaaaaacaaaaaggatgaatctgtg 10094816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 30992494 - 30992576
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||||||| | |||| ||||||||| |||||||||||| ||||    
T  30992494 aaataaatgatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaac-aaaaggatgaatatgtg 30992576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 15123673 - 15123751
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||||| |||||||| ||||| ||||||| | | || ||||||| ||  | ||||||||||||||||||| |||||||    
T  15123673 aaataaatgatattcattcattcaaattgatagagtagatcaatacaaagcaaatttgctaaaaacaaaaatgatgaat 15123751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 21552136 - 21552205
Alignment:
Q  189 attcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    ||||| ||||||||||||| | | || ||  || |||||| |||||||||||||||||| ||||||||||    
T  21552136 attcattcatttaaattgatagagtatattgatgtaatacaaatttgctaaaaacaaaagggatgaatct 21552205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 53904023 - 53903940
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||| | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  53904023 aaataaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 53903940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 54420410 - 54420493
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||||| |||||| ||||||| | ||||  ||||||||||||||||||||||||||    
T  54420410 aaataaaagatattcattcattcaaattgaaatagtacatcgatataatgcaaattcactaaaaacaaaaaggatgaatctgtg 54420493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 4634727 - 4634644
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  4634727 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatatgtg 4634644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 9662297 - 9662214
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  9662297 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatatgtg 9662214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 14542182 - 14542265
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | |||||||| |||||||   |||| |||||||||||||||||||||| ||||    
T  14542182 aaataaaagatattcattcattcaaattgatagaatacatcgatataatgtaaattcgctaaaaacaaaaaggatgaatatgtg 14542265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 34668630 - 34668547
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||| | ||||||||||||| | | |||||| ||||||| | ||||||||||||||||||||||||||| ||||    
T  34668630 aaataaatgatatttattcatttaaattgataaagtacatcgatataatgcaaatttgctaaaaacaaaaaggatgaatttgtg 34668547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 41487018 - 41486935
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| | ||||| | |||| |||||||||||||||||||||||||||    
T  41487018 aaataaaagatattcattcattcaaattgatagagtacatcgaaataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 41486935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 29473998 - 29474081
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||  | | |||||||||| |||   |||| |||||||||||||||||||||||||||    
T  29473998 aaataaaagatattcattcattcaaattggtagagtacatcaatacaatgaaaattcgctaaaaacaaaaaggatgaatctgtg 29474081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 30469816 - 30469876
Alignment:
Q  201 aaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||| | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  30469816 aaattgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 30469876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 6408889 - 6408806
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||||||||||| | | |||||  ||||||||  |||||| |||||| ||||||||||||| ||||    
T  6408889 aaataaatgatattcattcatttaaattgacaaagtacattgatataataaaaatttgataaaaataaaaaggatgaatatgtg 6408806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 7242456 - 7242539
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| | ||||||||||| | | |||||| ||| ||| | |||| |||||||||||||| ||||||||||||    
T  7242456 aaataaatgatattcatttatttaaattgatagagtacatcgatacaatgcaaattcgctaaaaacaaaaaagatgaatctgtg 7242539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 23002603 - 23002685
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||||| ||||| ||||||| | | |||||| ||||||| | |||| ||||||| |||||||||||||||||||    
T  23002603 aaataaaatatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaa-caaaaaggatgaatctgtg 23002685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 23067518 - 23067601
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||  ||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  23067518 aaataaattatattcattcattcaaattgacagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatttgtg 23067601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 50002874 - 50002941
Alignment:
Q  189 attcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||| ||||| |||| || ||| |||||| ||||||| |||||| ||||||||||||||||||||||    
T  50002874 attcattcattcaaatagatatagtacatcgatataatgcgaattcgctaaaaacaaaaaggatgaat 50002941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 38435042 - 38434960
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgt 260  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| |||||||   ||||||| ||||| |||||||||||||||||    
T  38435042 aaataaacgatattcattcattcaaattgatagagtacatcgatataatgaaaatttgccaaaaataaaaaggatgaatctgt 38434960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 9549876 - 9549808
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaa 246  Q
    ||||||| |||||||| ||||| ||||| | ||| |||||| ||||||| | |||||||||||||||||    
T  9549876 aaataaatgatattcattcattcaaattaatatagtacatcgatataatgcaaatttgctaaaaacaaa 9549808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 20961892 - 20961812
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    |||||||| ||||||| | ||| ||||||||| | |||||| ||||||| | |||| |||| || ||||||||||||||||    
T  20961892 aaataaaatatattcatttattcaaattgaaagagtacatcgatataatgcaaattcgctataagcaaaaaggatgaatct 20961812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 30416297 - 30416381
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaac-aaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||||||||||| | | |||||| ||| |||   |||| ||||||||| ||||||||||||||||||    
T  30416297 aaataaatgatattcattcatttaaattgatagagtacatcgatacaatgaaaattcgctaaaaacgaaaaaggatgaatctgtg 30416381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 42972483 - 42972399
Alignment:
Q  178 aaataaaagatattcagt-catttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| | |||| ||||||| | | |||||| ||||||| | |||| | |||||||||||||||||||||||||    
T  42972483 aaataaatgatattcaattcattcaaattgatagagtacatcgatataatgcaaattcgttaaaaacaaaaaggatgaatctgtg 42972399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 261
Target Start/End: Complemental strand, 39838001 - 39837970
Alignment:
Q  230 aatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||||||||||||||||||||||    
T  39838001 aatttgctaaaaacaaaaaggatgaatctgtg 39837970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 40913470 - 40913516
Alignment:
Q  213 tacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctg 259  Q
    |||||||||| ||||  ||||||||||||||||||| ||||||||||    
T  40913470 tacatcaatacaatataaatttgctaaaaacaaaaatgatgaatctg 40913516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 23926439 - 23926402
Alignment:
Q  224 aatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  23926439 aatacaaattcgctaaaaacaaaaaggatgaatctgtg 23926402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 52555452 - 52555493
Alignment:
Q  220 atataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| | |||| |||||||||||||||||||||||||||    
T  52555452 atataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 52555493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 23964114 - 23964050
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaa 242  Q
    ||||||| |||||||| ||||| ||||||| |||||||||  ||| ||||  |||||||||||||    
T  23964114 aaataaacgatattcattcattcaaattgagataatacattgatacaatataaatttgctaaaaa 23964050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 46309819 - 46309851
Alignment:
Q  95 aattaaagattgtggatctttcattattcttga 127  Q
    ||||||| |||||||||||||||||||||||||    
T  46309819 aattaaaaattgtggatctttcattattcttga 46309851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 50981395 - 50981467
Alignment:
Q  189 attcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||| ||||| ||||||| ||| |||||| ||  ||||| |||| ||||||||||||||| |||||| ||||    
T  50981395 attcattcattcaaattgatatagtacatcgatgcaatacaaattcgctaaaaacaaaaagtatgaatttgtg 50981467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 8054478 - 8054561
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | |||||||| ||||||||| |||| |||||||||||||||||||||| ||||    
T  8054478 aaataaatgatattcattcattcaaattgatagaatacatcgatataatacaaattcgctaaaaacaaaaaggatgaatatgtg 8054561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 9993110 - 9993027
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  9993110 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 9993027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 41996987 - 41996904
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| |||||||||||||   | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  41996987 aaataaatgatattcattcatttaaattgatcgagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 41996904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 5457515 - 5457432
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||||||||  |||| |||||||||||||| ||||||||||||    
T  5457515 aaataaatgatattcattcattcaaattgatagagtacatcgatataatataaattcgctaaaaacaaaaatgatgaatctgtg 5457432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 16996559 - 16996642
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||| | |||||| |||| || | |||| |||||||||||| ||| ||||||||||    
T  16996559 aaataaaagatattcattcattcaaattgaaagagtacatcgatatgatgcaaattcgctaaaaacaaataggttgaatctgtg 16996642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 44295760 - 44295677
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||| ||||||| ||||    
T  44295760 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaatgatgaatatgtg 44295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 5990057 - 5989976
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctg 259  Q
    ||||||| || ||||| ||||||||||| | ||| |||||||||| ||| | |||| |||||||||||||| ||||||||||    
T  5990057 aaataaatgacattcattcatttaaattaatatagtacatcaatagaatgcaaattcgctaaaaacaaaaatgatgaatctg 5989976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 32413234 - 32413156
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||||| |||||||| ||||| ||||||| | | |||||  ||||||| | |||| ||||||||||||||||||||||    
T  32413234 aaataaatgatattcattcattcaaattgatagagtacattgatataatgcaaattcgctaaaaacaaaaaggatgaat 32413156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 16937950 - 16938023
Alignment:
Q  186 gatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctg 259  Q
    |||||||| ||||||||||||| | | |||||| ||| ||| | |||| ||||||||||||||| |||||||||    
T  16937950 gatattcattcatttaaattgatagagtacatcgatacaatgcaaattcgctaaaaacaaaaagcatgaatctg 16938023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 5328391 - 5328311
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgt 260  Q
    ||||||| |||||||| || |||||||||| | | |||||| ||||||| | |||| ||||||||  ||||||||||||||||    
T  5328391 aaataaatgatattcattcttttaaattgatagagtacatcgatataatgcaaattcgctaaaaa--aaaaggatgaatctgt 5328311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 32104507 - 32104590
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||  ||||||| ||||| ||||||| | | |||||| ||||||| | |||| | |||||||||||| ||||||||||||    
T  32104507 aaataaattatattcattcattcaaattgatagagtacatcgatataatgcaaattcgttaaaaacaaaaatgatgaatctgtg 32104590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 37129344 - 37129425
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataa-tacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    |||||||||||||||| || || |||||||||  | |||||| ||||||| | |||| | |||||||||||| |||||||||    
T  37129344 aaataaaagatattcattctttcaaattgaaaagagtacatcgatataatgcaaattcgttaaaaacaaaaaagatgaatct 37129425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 27534101 - 27534165
Alignment:
Q  197 atttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||| | |||||| ||  ||||| ||||  ||||||| ||||||||||||||||||    
T  27534101 atttaaattgaaagagtacatcgatgcaatacaaattcactaaaaataaaaaggatgaatctgtg 27534165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 15276116 - 15276199
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  15276116 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 15276199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 15698642 - 15698559
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||| | |||||| ||||||| | |||| ||||||||||| |||||||||| ||||    
T  15698642 aaataaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaattcgctaaaaacaagaaggatgaatatgtg 15698559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 38644467 - 38644550
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||  ||||||| ||||||||||||| | | |||||||||||||| | |||||||||||||| |||||||||||| ||||    
T  38644467 aaataaattatattcattcatttaaattgatagagtacatcaatataatgcaaatttgctaaaaactaaaaggatgaatatgtg 38644550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 38647028 - 38646945
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | | |||||||||||||| | |||| ||||||||||||||||||||| |||||    
T  38647028 aaataaatgatattcattcattcaaattgatagagtacatcaatataatgcaaattcgctaaaaacaaaaaggatgaaactgtg 38646945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 49652279 - 49652196
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||||||| | |||||||||||||||||||||||| |||||||    
T  49652279 aaataaatgatattcattcattcaaattgatagagtacatcgatataatgcaaatttgctaaaaacaaaaaggatggatctgtg 49652196  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 630457 - 630537
Alignment:
Q  181 taaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||| ||||||||||||    
T  630457 taaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaatgatgaatctgtg 630537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 5844572 - 5844492
Alignment:
Q  181 taaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||| | ||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  5844572 taaaagatattcattaattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 5844492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 14716946 - 14717029
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||||| ||||| ||||||| | | |||||  ||||||| | |||| |||||||||||||||||||||||||||    
T  14716946 aaataaaatatattcattcattcaaattgataaagtacatagatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 14717029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 45659450 - 45659375
Alignment:
Q  186 gatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| |||||||||| || | | |||||| ||||||| | |||||||||||||||||| |||||||||||||    
T  45659450 gatattcattcatttaaatcgatagagtacatcgatataatgcaaatttgctaaaaacaaaagggatgaatctgtg 45659375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 23257532 - 23257454
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||||| |||||| | ||||||||||||| | | |||||| ||||||| | |||| ||||||||||||||||||||||    
T  23257532 aaataaatgatatttattcatttaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaat 23257454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 13969310 - 13969391
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctg 259  Q
    ||||||| |||||||| ||||| ||||||| | |||||||| ||| ||| | |||| || ||||||||||||||||||||||    
T  13969310 aaataaatgatattcattcattcaaattgatagaatacatcgatacaatgcaaattcgcaaaaaacaaaaaggatgaatctg 13969391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 8893736 - 8893656
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||| ||| | |||| ||||||||||||||||||||||||    
T  8893736 aaataaatgatattcattcattcaaattgatagagtacatcgatacaatgcaaattcgctaaaaacaaaaaggatgaatct 8893656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 44513672 - 44513752
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    |||||||||||||||| ||||||||||||  | | |||||| ||| |||   |||| ||||||||||||||||||||||||    
T  44513672 aaataaaagatattcattcatttaaattggtagagtacatcgatacaatgaaaattcgctaaaaacaaaaaggatgaatct 44513752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 12967403 - 12967486
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||||| | | ||||||||||||||||||| ||| ||||||||    
T  12967403 aaataaatgatattcattcattcaaattgatagagtacatcgatatagtgcaaatttgctaaaaacaaaaatgataaatctgtg 12967486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 18344062 - 18343979
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||| | | ||| ||||||| | | || ||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  18344062 aaataaacgatatttatttattcaaattgatagagtatatcgatacaatacaaatttgctaaaaacaaaaaggatgaatctgtg 18343979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 22344582 - 22344665
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| | |||||||||||| ||||||| ||||    
T  22344582 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgttaaaaacaaaaatgatgaatatgtg 22344665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 33703180 - 33703263
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| || |||||||||| | | |||||| ||| ||||  || || ||||||||||||||||||||||||||    
T  33703180 aaataaacgatattcattcgtttaaattgatagagtacatcgatacaataaaaaatttctaaaaacaaaaaggatgaatctgtg 33703263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 44562419 - 44562502
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||| | ||||||| | | |||||| ||||||| | |||| | |||||||||||||||||||||||||    
T  44562419 aaataaatgatattcattcagtcaaattgatagagtacatcgatataatgcaaattcgataaaaacaaaaaggatgaatctgtg 44562502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 34659311 - 34659389
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||| ||| | ||||||||||||||| |||||||||||    
T  34659311 aaataaatgatattcattcattcaaattgatagagtacatcgatacaatgcaaatttgctaaaaacataaaggatgaat 34659389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 33177268 - 33177349
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctg 259  Q
    |||||||  ||||||| ||||| ||||| | | | |||||| ||| ||| | ||||||||||||||||||||||||||||||    
T  33177268 aaataaataatattcattcattcaaattaatagagtacatcgatacaatgcaaatttgctaaaaacaaaaaggatgaatctg 33177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 11121420 - 11121337
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | |||||||| ||| |||   | || |||||||||||||||||||||| ||||    
T  11121420 aaataaatgatattcattcattcaaattgatagaatacatcgatacaatgaaagttcgctaaaaacaaaaaggatgaatttgtg 11121337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 13691450 - 13691513
Alignment:
Q  195 tcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    ||||| ||||||| | | |||||| ||  ||||| |||||||||||||||||||||||||||||    
T  13691450 tcattcaaattgatagagtacatcgatgcaatacaaatttgctaaaaacaaaaaggatgaatct 13691513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 28213497 - 28213414
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| | ||| ||||||| | | |||||  ||||||| | |||| |||||||||||||||||||||| ||||    
T  28213497 aaataaatgatattcatttattcaaattgataaagtacattgatataatgcaaattcgctaaaaacaaaaaggatgaatatgtg 28213414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 23410658 - 23410704
Alignment:
Q  97 ttaaagattgtggatctttcattattcttgacaattgatcatatgtg 143  Q
    |||||||| |||||||||| |||||||||||| |||| |||||||||    
T  23410658 ttaaagatcgtggatctttaattattcttgaccattggtcatatgtg 23410704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 26771550 - 26771472
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||| ||||| ||||  ||||||||||||| |||||||    
T  26771550 aaataaatgatattcattcattcaaattgatagagtacatcgatacaatacaaattcactaaaaacaaaaaagatgaat 26771472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 30853617 - 30853697
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctg 259  Q
    ||||||| |||||||| | ||| ||||||| |||||||||| ||| ||| | |||| |||| || |||||||||||||||||    
T  30853617 aaataaatgatattcatttattcaaattgatataatacatcgatacaatgcaaattcgctagaa-caaaaaggatgaatctg 30853697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 37138714 - 37138677
Alignment:
Q  107 tggatctttcattattcttgacaattgatcatatgtga 144  Q
    |||||||||||||||||||||  |||||||||||||||    
T  37138714 tggatctttcattattcttgatcattgatcatatgtga 37138677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 22031780 - 22031852
Alignment:
Q  186 gatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    |||||||| ||||| ||||||| | | |||||||||| ||||| ||||  ||||||| || ||||||||||||    
T  22031780 gatattcattcattcaaattgatagagtacatcaatacaatacaaattcactaaaaataataaggatgaatct 22031852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 34567114 - 34567042
Alignment:
Q  189 attcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||| ||||| ||||||| | | |||||| ||  ||||| |||| |||||||| ||||||||||||||||||    
T  34567114 attcattcattcaaattgatagagtacatcgatgcaatacaaattcgctaaaaataaaaaggatgaatctgtg 34567042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 11426383 - 11426309
Alignment:
Q  184 aagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    |||||||||| ||||||||||||||| | |||||| ||||||| | |||| ||||||||||||||||||||||||    
T  11426383 aagatattcattcatttaaattgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatct 11426309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 20845457 - 20845379
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    |||||||||||||||| ||||| ||||||| ||| |||||| ||||||||| |||| ||||||||||||||| ||||||    
T  20845457 aaataaaagatattcattcattcaaattgatatagtacatcgatataatacaaattcgctaaaaacaaaaagaatgaat 20845379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 16913772 - 16913689
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| | ||||| ||||| ||||||||||| |||||| ||||||| | |||| ||||||||||||||| |||||||||||    
T  16913772 aaataaaataaattcattcattcaaattgaaatagtacatcgatataatgcaaattcgctaaaaacaaaaagaatgaatctgtg 16913689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 8632875 - 8632949
Alignment:
Q  187 atattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| ||||| ||||||||||| |||||| ||||||| | |||| |||||||||||||| ||||||||||||    
T  8632875 atattcattcattcaaattgaaatagtacatcgatataatgcaaattcgctaaaaacaaaaaagatgaatctgtg 8632949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 12576152 - 12576234
Alignment:
Q  179 aataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||||| ||||| ||||||||| | |||||  ||||||| | |||| |||||||||||||||||||||| ||||    
T  12576152 aataaaagatattcattcattcaaattgaaagagtacatagatataatgcaaattcgctaaaaacaaaaaggatgaatttgtg 12576234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 13233778 - 13233861
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||||| | ||| ||||||| | | || ||||||||||||| |||| |||||||||||||||||||||| ||||    
T  13233778 aaataaaatatattcattaattcaaattgatagagtatatcaatataatacaaattcgctaaaaacaaaaaggatgaatatgtg 13233861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 31748401 - 31748318
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||| | ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  31748401 aaataaaatatatttattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 31748318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 548542 - 548625
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| | ||| ||||||| | | |||||||||||||| | |||| || ||||| ||||||||||||||||||    
T  548542 aaataaatgatattcattgattcaaattgatagagtacatcaatataatgcaaattcgcaaaaaataaaaaggatgaatctgtg 548625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 23843094 - 23843177
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||  ||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||| ||||||||||||    
T  23843094 aaataaataatattcattcattcaaattgatagagtacatccatataatgcaaattcgctaaaaacaaaaatgatgaatctgtg 23843177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 4921564 - 4921647
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||||||||||| | | |||||| |||  |||| || | |||||||| ||||| ||||||||||||    
T  4921564 aaataaacgatattcattcatttaaattgatagagtacatcgataccatacaaactcgctaaaaataaaaatgatgaatctgtg 4921647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 261
Target Start/End: Original strand, 15589839 - 15589870
Alignment:
Q  230 aatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||||||||||||||||||||||    
T  15589839 aatttgctaaaaacaaaaaggatgaatctgtg 15589870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 20496637 - 20496556
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctg 259  Q
    ||||||| |||||||| ||||| ||||||| |   |||||  ||| ||| | |||| |||||||||||||||||||||||||    
T  20496637 aaataaatgatattcattcattcaaattgatagcgtacattgatacaatgcaaattcgctaaaaacaaaaaggatgaatctg 20496556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 34021001 - 34020964
Alignment:
Q  224 aatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  34021001 aatacaaattcgctaaaaacaaaaaggatgaatctgtg 34020964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 28619046 - 28618968
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    |||||||||||||||| ||||| ||||||||| | |||||| ||||||| | |||| ||||||||||||||||||||||    
T  28619046 aaataaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaat 28618968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 6886848 - 6886931
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||||||||||| | | |||||| ||||||| | |||| |||||||||||||| ||||||| ||||    
T  6886848 aaataaaagatattcattcatttaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaatgatgaatatgtg 6886931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 10923804 - 10923887
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||||||||||| | || ||| |||||| ||||||||||||||||||    
T  10923804 aaataaaagatattcattcattcaaattgatagagtacatcaatataatgcaaaattgttaaaaataaaaaggatgaatctgtg 10923887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 31646273 - 31646190
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  31646273 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatatgtg 31646190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 4070994 - 4070914
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    |||||||||||||||| ||||| ||||||||| | |||||| ||||||| | |||| |||||||| ||||||||| |||||    
T  4070994 aaataaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaattcgctaaaaataaaaaggataaatct 4070914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 33486242 - 33486322
Alignment:
Q  181 taaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||| ||||| ||||||| | |||||||| ||| ||||  |||| |||||||||||||| ||||||||||||    
T  33486242 taaaagatattcattcattcaaattgatagaatacatcgataaaataaaaattcgctaaaaacaaaaatgatgaatctgtg 33486322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 5378746 - 5378663
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||||||| | |||| ||||||| |||||||||||||||||||    
T  5378746 aaataaatgatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaatcaaaaaggatgaatctgtg 5378663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 35906713 - 35906630
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||||||||||| | |||| ||||||||| ||||| |||||| ||||    
T  35906713 aaataaaagatattcattcattcaaattgatagagtacatcaatataatgcaaattcgctaaaaactaaaagtatgaatatgtg 35906630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 19645707 - 19645789
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| |||| || | | |||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  19645707 aaataaatgatattcattcattcaaatcgata-agtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatctgtg 19645789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 15710988 - 15710910
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||||| |||||||| ||||| ||||||| | |||||||||||| ||| | ||||  |||||| ||||||||||||||    
T  15710988 aaataaatgatattcattcattcaaattgatagaatacatcaatacaatgcaaattcactaaaaccaaaaaggatgaat 15710910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 17325342 - 17325416
Alignment:
Q  186 gatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgt 260  Q
    |||||||| ||||| ||||||| | | |||||| ||  ||||| ||||||||||||||||||| |||||||||||    
T  17325342 gatattcattcattcaaattgatagattacatcgatgcaatacaaatttgctaaaaacaaaaaagatgaatctgt 17325416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 29310035 - 29310107
Alignment:
Q  189 attcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  29310035 attcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatatgtg 29310107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 261
Target Start/End: Original strand, 6681591 - 6681622
Alignment:
Q  230 aatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||||||||||||||||||||||    
T  6681591 aatttgctaaaaacaaaaaggatgaatctgtg 6681622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 14910346 - 14910429
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||  | | |||| | ||| ||||  |||| |||||||||||||||||||||||||||    
T  14910346 aaataaacgatattcattcattcaaattgttagagtacaacgatacaataaaaattcgctaaaaacaaaaaggatgaatctgtg 14910429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 34874285 - 34874216
Alignment:
Q  187 atattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    ||||||| ||||||||||| | | | | |||||||| ||| | |||| ||||||||||||||||||||||    
T  34874285 atattcattcatttaaattaatagagtgcatcaatacaatgcaaattcgctaaaaacaaaaaggatgaat 34874216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 40564838 - 40564910
Alignment:
Q  189 attcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||| ||||| ||||||| | | |||||| ||  ||||| ||||||||||||||||||| ||||||| ||||    
T  40564838 attcattcattcaaattgatagagtacatcgatgcaatacaaatttgctaaaaacaaaaaagatgaatttgtg 40564910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 3088334 - 3088417
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||| | ||||| ||||||||| | |||||| ||||||| | |||| |||||||||||||| ||||||||||||    
T  3088334 aaataaaagatatttattcattcaaattgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaatgatgaatctgtg 3088417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 10977687 - 10977604
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| ||| |||||| |||| || | |||| |||||||||||||||||||||| ||||    
T  10977687 aaataaaagatattcattcattcaaattgatatagtacatcgatatcatgcaaattcgctaaaaacaaaaaggatgaatatgtg 10977604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 43030127 - 43030044
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  43030127 aaataaaagatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatatgtg 43030044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 50520227 - 50520144
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||||| | |||||| ||||||| | |||| |||||||| ||||| ||||||||||||    
T  50520227 aaataaaagatattcattcattcaaattgaaagagtacatcgatataatgcaaattcgctaaaaataaaaatgatgaatctgtg 50520144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 1165066 - 1165149
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||||| ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  1165066 aaataaaatatattcattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatatgtg 1165149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 21803975 - 21803892
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||| | ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  21803975 aaataaaagatatttattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatttgtg 21803892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 45664665 - 45664583
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgt 260  Q
    ||||||| |||||||| ||||||||||||| | | |||||| |||||||   |||| |||||||| |||||||||||||||||    
T  45664665 aaataaatgatattcattcatttaaattgatagagtacatcgatataatgtaaattcgctaaaaataaaaaggatgaatctgt 45664583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 22286421 - 22286504
Alignment:
Q  177 caaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||||||||||| ||||| || |||| | | |||||| ||||||| | |||| |||||||||||||| ||||||||||||    
T  22286421 caaataaaagatattcattcattcaa-ttgagagagtacatcgatataatgcaaattcgctaaaaacaaaaatgatgaatctgtg 22286504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 47914263 - 47914346
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| | ||| ||||  ||| | |||||| || |||| | |||| |||||||||||||||||||||||||||    
T  47914263 aaataaaagatattcattaattcaaatgaaaagagtacatcgatgtaatgcaaattcgctaaaaacaaaaaggatgaatctgtg 47914346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 20200728 - 20200806
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    |||||||||||||||| ||||| ||||||| | | |||||  ||||||||| |||| ||||||||  ||||||||||||    
T  20200728 aaataaaagatattcattcattcaaattgatagagtacattgatataatacaaattcgctaaaaatgaaaaggatgaat 20200806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 20202910 - 20202988
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaat 256  Q
    |||||||||||||||| ||||| ||||||| | | |||||  ||||||||| |||| ||||||||  ||||||||||||    
T  20202910 aaataaaagatattcattcattcaaattgatagagtacattgatataatacaaattcgctaaaaatgaaaaggatgaat 20202988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 33977595 - 33977677
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgt 260  Q
    |||||||| ||||||| ||||| |||||||||   |||||| ||| ||| | |||| | ||||||||||||||||||||||||    
T  33977595 aaataaaatatattcattcattcaaattgaaaaggtacatcgataaaatgcaaattcgttaaaaacaaaaaggatgaatctgt 33977677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 46926843 - 46926765
Alignment:
Q  183 aaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||| | ||||| ||||||| | | |||||| ||||||| | |||| |||||||||||||||||||||| ||||    
T  46926843 aaagatatttattcattcaaattgatagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatttgtg 46926765  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 11846992 - 11846916
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatga 254  Q
    ||||||| |||||||| ||||| ||||||| | | |||||||||| ||| | |||| |||||||| |||||||||||    
T  11846992 aaataaatgatattcattcattcaaattgacagagtacatcaataaaatgcaaattcgctaaaaataaaaaggatga 11846916  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 14740364 - 14740447
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||| | ||||| ||||||||| | |||||| || |||| | |||| | |||||| ||||||||||||||||||    
T  14740364 aaataaaatatatttattcattcaaattgaaagagtacatcgatgtaatgcaaattcgttaaaaataaaaaggatgaatctgtg 14740447  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 28994996 - 28995059
Alignment:
Q  195 tcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatct 258  Q
    ||||| |||| |||| | |||||| ||||||| | |||| ||||||||||||||||||||||||    
T  28994996 tcattcaaatcgaaagagtacatcgatataatgcaaattcgctaaaaacaaaaaggatgaatct 28995059  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 43839195 - 43839270
Alignment:
Q  186 gatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||| ||||| ||||||| | | |||||| |||||||   ||||||||||||| |||||| |||||||||||    
T  43839195 gatattcattcattcaaattgatagagtacatcgatataatgtaaatttgctaaaaataaaaagaatgaatctgtg 43839270  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 1806164 - 1806208
Alignment:
Q  213 tacatcaatataatacgaatttgctaaaaacaaaaaggatgaatc 257  Q
    |||||| || |||||| |||| |||||||||||||||||||||||    
T  1806164 tacatcgatttaatacaaattcgctaaaaacaaaaaggatgaatc 1806208  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 27070461 - 27070493
Alignment:
Q  95 aattaaagattgtggatctttcattattcttga 127  Q
    ||||||||||||||||| |||||||||||||||    
T  27070461 aattaaagattgtggatatttcattattcttga 27070493  T

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Target: scaffold0722 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 5196 - 5278
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||| | | | |||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  5196 aaataaatgatattcattcattcaaatttatagagtacatcgatataatacaaatttgctaaaaacaaaaagg-tgaatctgtg 5278  T

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Target: scaffold0432 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 2104 - 2187
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| |||||||| ||||| ||||||| | | |||||| ||| ||||| |||| |||||||| ||||||||||||||||||    
T  2104 aaataaacgatattcattcattcaaattgataaagtacatcgatacaatacaaattcgctaaaaataaaaaggatgaatctgtg 2187  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 36968 - 36885
Alignment:
Q  178 aaataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||||||||| ||||| ||||||| | | |||||  |||||||   |||||| |||||||||||||||||||| ||||    
T  36968 aaataaaagatattcattcattcaaattgatagagtacattgatataatgtaaatttgttaaaaacaaaaaggatgaatatgtg 36885  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 11893 - 11956
Alignment:
Q  198 tttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    |||||||||| | | |||||| || |||| | |||| |||||||||||||||||||||||||||    
T  11893 tttaaattgatagagtacatcgatgtaatgcaaattcgctaaaaacaaaaaggatgaatctgtg 11956  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 1592 - 1674
Alignment:
Q  179 aataaaagatattcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||| ||||||| ||||| ||||||||| | |||||  ||||||| | |||| | |||||||||||| ||||||| ||||    
T  1592 aataaaacatattcattcattcaaattgaaagagtacattgatataatgcaaattcgttaaaaacaaaaaagatgaatttgtg 1674  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 105479 - 105413
Alignment:
Q  189 attcagtcatttaaattgaaataatacatcaatataatacgaatttgctaaaaacaaaaaggatgaa 255  Q
    ||||| ||||| ||||||| ||| |||||| ||  ||||| |||| |||||||||||||||||||||    
T  105479 attcattcattcaaattgatatagtacatcgatgcaatacaaattcgctaaaaacaaaaaggatgaa 105413  T

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Target: scaffold1827 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1827
Description:

Target: scaffold1827; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 777 - 818
Alignment:
Q  220 atataatacgaatttgctaaaaacaaaaaggatgaatctgtg 261  Q
    ||||||||| |||||||||||||||||| |||||||| ||||    
T  777 atataatacaaatttgctaaaaacaaaagggatgaatatgtg 818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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