View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_high_28 (Length: 247)
Name: NF2270_high_28
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 25623060 - 25623295
Alignment:
| Q |
1 |
catcgatgaaccaaaacttaatgtaatcggttgttgtaacgagctcaatgctggttacgcagccgatggttatgctcggtcatgtggcgttggagcttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25623060 |
catcgatgaaccaaaacttaatgtaatcggttgttgtaacgagctcaatgcaggttacgcagccgatggttatgctcggtcatgtggcgtcggagcttgt |
25623159 |
T |
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| Q |
101 |
gtggtaactttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggacctaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25623160 |
gtggtaactttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggacctaact |
25623259 |
T |
|
| Q |
201 |
ccaatgattatggaagtaacaggattcttcatcata |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25623260 |
ccaatgattatggaagtaacaggattcttcatcata |
25623295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 25603872 - 25604082
Alignment:
| Q |
26 |
atcggttgttgtaacgagctcaatgctggttacgcagccgatggttatgctcggtcatgtggcgttggagcttgtgtggtaactttcactgttggtgggt |
125 |
Q |
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|||||||| ||||||||||| ||||||||||| || || |||||||||||||||||| ||||||| || |||||||| || ||||||||||||||||||| |
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| T |
25603872 |
atcggttgctgtaacgagctaaatgctggttatgcggctgatggttatgctcggtcacgtggcgtcggtgcttgtgttgttactttcactgttggtgggt |
25603971 |
T |
|
| Q |
126 |
tgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggat |
225 |
Q |
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| T |
25603972 |
tgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgtattgttggtggacccaattctaatgattatgggactagtaggat |
25604071 |
T |
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| Q |
226 |
tcttcatcata |
236 |
Q |
| |
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||||||||||| |
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| T |
25604072 |
tcttcatcata |
25604082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 20434107 - 20434317
Alignment:
| Q |
26 |
atcggttgttgtaacgagctcaatgctggttacgcagccgatggttatgctcggtcatgtggcgttggagcttgtgtggtaactttcactgttggtgggt |
125 |
Q |
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|||||||| |||||||| || |||||||| || || || ||||| ||||| |||| | || || ||||||||||| || || || ||||||||||||| |
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| T |
20434107 |
atcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtctagaggtgtgggagcttgtgttgttacatttactgttggtgggt |
20434206 |
T |
|
| Q |
126 |
tgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggat |
225 |
Q |
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| T |
20434207 |
taagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtggaccaaattctaatgattttgggactaatagaat |
20434306 |
T |
|
| Q |
226 |
tcttcatcata |
236 |
Q |
| |
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||||||||||| |
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| T |
20434307 |
tcttcatcata |
20434317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 5329997 - 5330207
Alignment:
| Q |
26 |
atcggttgttgtaacgagctcaatgctggttacgcagccgatggttatgctcggtcatgtggcgttggagcttgtgtggtaactttcactgttggtgggt |
125 |
Q |
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|||||||| ||||| || || |||||||| || || || ||||| ||||| |||| | || || ||||||||||| || || || ||||||||||||| |
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| T |
5329997 |
atcggttgctgtaatgaactgaatgctggatatgctgctgatggatatgcaaggtctagaggtgtgggagcttgtgttgttacatttactgttggtgggt |
5330096 |
T |
|
| Q |
126 |
tgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggat |
225 |
Q |
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| ||||| ||||||| || |||||||||||||||||||||||||| | ||||| || |||||||||||||| || ||||||| ||| | ||| || || |
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| T |
5330097 |
taagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtggacctaattctaatgattttgggactaatagaat |
5330196 |
T |
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| Q |
226 |
tcttcatcata |
236 |
Q |
| |
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||||||||||| |
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| T |
5330197 |
tcttcatcata |
5330207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 1877653 - 1877757
Alignment:
| Q |
132 |
ttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggattcttca |
231 |
Q |
| |
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||||||||||||| |||||| |||||||||| || | || |||| ||||| ||||||| || || |||||||||| ||||||||||| |||||| || |
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| T |
1877653 |
ttcttaatgctattgctggttcttatagtgaagatcttccaattatatgcattgttggtgccccaaattccaatgattttggaagtaacaagattctcca |
1877752 |
T |
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| Q |
232 |
tcata |
236 |
Q |
| |
|
||||| |
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| T |
1877753 |
tcata |
1877757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 4624837 - 4624921
Alignment:
| Q |
152 |
gcttatagtgagaatttgccgcttatttgcatcgttggtggacctaactccaatgattatggaagtaacaggattcttcatcata |
236 |
Q |
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||||| ||||| || |||||| | ||||| || ||||| |||||||| || ||||| ||||| | |||||| ||||||||||||| |
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| T |
4624837 |
gcttacagtgaaaacttgccggtgatttgtattgttggaggacctaattctaatgactatggtactaacagaattcttcatcata |
4624921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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