View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_high_3 (Length: 598)
Name: NF2270_high_3
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 253 - 586
Target Start/End: Complemental strand, 3734348 - 3734007
Alignment:
| Q |
253 |
gtgattgcaggaattattataggtgttcagtggaggggtgtcctgtnnnnnnnngagttgagagagataataatgattcgagttatgtgataacaactta |
352 |
Q |
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| T |
3734348 |
gtgattgcaggaattattataggtgttcagtggaggggtgtcctgtaaaaaaaagagttgagagagataataatgattcgagttatgtgataacaactta |
3734249 |
T |
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| Q |
353 |
tgaaggcatgcacacccatccaaattcttgctagctcaaacataatatgaagaagttcttt-------------actaatgttactagtattcctacatg |
439 |
Q |
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| T |
3734248 |
tgaaggcatgcacacccatccaaattcttgctagctcaaacataatatgaagaagttctttgctgcatgctcttactaatgttactagtattcctacatg |
3734149 |
T |
|
| Q |
440 |
aaaatattcaaattcccaacaagtttgagtttgcaattgctcatgtacaatttaccttaaaaagggttttgaactttgaagaatatatatacaaagctta |
539 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3734148 |
aaaatattcaaattcccaacaagtttgagtttgcaattgctcatgtacaatttactttaaaaagggttttgaactttgaagaatatatatacaaagctta |
3734049 |
T |
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| Q |
540 |
gtcagcaaataactatacattactattcatctagattcggttatatt |
586 |
Q |
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| T |
3734048 |
gtcagcaaataacta-----tactattcatctagattcggttatatt |
3734007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 3734596 - 3734391
Alignment:
| Q |
1 |
atgttttaggagatactaataatatgaatatgagtggaaacgagaattggaagaaggaagttaaggaaagagttgcattcaaaacaaagtcactgattga |
100 |
Q |
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| T |
3734596 |
atgttttaggagatactaataatatgaatatgagtggaaacgagaattggaagaaggaagttaaggaaagagttgcattcaaaacaaagtcactgattga |
3734497 |
T |
|
| Q |
101 |
aatacttgatgatgggtacagatggaggaagtatggaaagaaaatggttaagaatagccctaatccaaggtatatgtattggaataccatgaaattaatt |
200 |
Q |
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| T |
3734496 |
aatacttgatgatgggtacagatggaggaagtatggaaagaaaatggttaagaatagccctaatccaaggtatatatattggaataccatgaaattaatt |
3734397 |
T |
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| Q |
201 |
gataac |
206 |
Q |
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|||||| |
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| T |
3734396 |
gataac |
3734391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 48289119 - 48289018
Alignment:
| Q |
71 |
agttgcattcaaaacaaagtcactgattgaaatacttgatgatgggtacagatggaggaagtatggaaagaaaatggttaagaatagccctaatccaagg |
170 |
Q |
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||||||||||||||| |||||| | ||||||| || |||||||||| ||||||||||||||| |||||||| ||||| || || ||||| ||||||||| |
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| T |
48289119 |
agttgcattcaaaaccaagtcagaggttgaaattctggatgatgggttcagatggaggaagtacggaaagaagatggtgaaaaacagccccaatccaagg |
48289020 |
T |
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| Q |
171 |
ta |
172 |
Q |
| |
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|| |
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| T |
48289019 |
ta |
48289018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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