View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_high_35 (Length: 230)
Name: NF2270_high_35
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 45309074 - 45308894
Alignment:
| Q |
38 |
tcccggatacacaacacaaaagttaaacgtctggttattgagaagtcttataattgatgagatatggtttaaacatgtttttaatggttgacacttgacg |
137 |
Q |
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| T |
45309074 |
tcccggatacataacataaaagttaaacgtctggttattgagaagtcttataattgatgagatatggtttaaacatgtttttaatggttgacacttgacg |
45308975 |
T |
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| Q |
138 |
gtcgtcaccttacaagtcgnnnnnnnaggatatctcaaaacctatctaagatccatttgcaaaattaccaccaaaatcctg |
218 |
Q |
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| T |
45308974 |
gtcgtcaccttacaagtcgtttttttaggatatctcaaaacctatctaagatccatttgcaaaattaccaccaaaatcctg |
45308894 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 87775 - 87720
Alignment:
| Q |
50 |
aacacaaaagttaaacgtctggttattgagaagtcttataattgatgagatatggt |
105 |
Q |
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| T |
87775 |
aacacaaaagtcaaaggcctggttgttgagaagtctgatatttgatgagatatggt |
87720 |
T |
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