View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_high_4 (Length: 510)
Name: NF2270_high_4
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 470
Target Start/End: Original strand, 26562794 - 26563247
Alignment:
| Q |
22 |
ggagtcattaacaagaacaaaaagatgtgggaggttccgtctgaagagtttgatttggtgatggataccaacttgaaaggtgctgccaatgtgttgaggc |
121 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
26562794 |
ggagtcattaacaagaacaacaagatgtgggaggttttgtctgaagagtttgatttggtgatggataccaacttgaaaggtaatgtcaatgtgttgaggc |
26562893 |
T |
|
| Q |
122 |
acttcatacctttaatggt------gaacatgtcttcaggttgggg---aagatcaggtgctgcacttgtagcaccttactttgcatccaaatgggaaat |
212 |
Q |
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||||||| |||| ||||| ||||| | | || | || |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26562894 |
acttcatttctttgatggttaaaaagaacaagaatgaagagggagggataagatcaggtgctgcactcgtagcaccttactttgcatccaaatgggaaat |
26562993 |
T |
|
| Q |
213 |
tgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggcagtggtggcactcaatacaggagtcatcagcactaacatacttgcgtcttgc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26562994 |
tgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggcagtgatggcactcaatacaggagtcatcagcactaacatacttgcgtcttgc |
26563093 |
T |
|
| Q |
313 |
tacggtgcttcctcatctctctgtcaatccccagaatcatgggttttggaggcagccactaaaatactcaatcttacacccacaaacaatggtgctnnnn |
412 |
Q |
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| T |
26563094 |
tacggtgcttcctcatctctctatcaatccccagaatcatgggttttggaggaagccaccaaaatactcaatcttacacccacaaacaatggtgct---- |
26563189 |
T |
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| Q |
413 |
nnnnnnnnnatttgaagtcactcacataatctcctagttagatatctagctatatgat |
470 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
26563190 |
tctctctctatttgaagtcactcacctaatctcctagttagaaatctagctacatgat |
26563247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 134 - 498
Target Start/End: Complemental strand, 26560672 - 26560312
Alignment:
| Q |
134 |
taatggtgaacatgtcttcaggttggggaagatcaggtgctgcacttgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgt |
233 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||| |
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| T |
26560672 |
taatagtgaacatgtcttcaggttggggaagatcagttgctgcacttgtagcaccttactgtgtatccaaatgggcaattgaaggacttaccaagtctgt |
26560573 |
T |
|
| Q |
234 |
tgctgaagagtttcctaaaggaatggcagtggtggcactcaatacaggagtcatcagcactaacatacttgcgtcttgctacggtgcttcctcatctctc |
333 |
Q |
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|| ||||||||| ||||||| |||||||||||||||||||||| |||| ||||||| ||||||||| ||||| | |||||| ||||||||||||||||| |
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| T |
26560572 |
tgttgaagagttgcctaaagtaatggcagtggtggcactcaatccaggggtcatcaacactaacatgcttgctttttgctatggtgcttcctcatctctt |
26560473 |
T |
|
| Q |
334 |
tgtcaatccccagaatcatgggttttggaggcagccactaaaatactcaatcttacacccacaaacaatggtgctnnnnnnnnnnnnnatttgaagtcac |
433 |
Q |
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| || || |||||||||||||||||||||||||||||| || ||||||||||||||||| ||| | |||||| || |||||||||||| |
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| T |
26560472 |
tatcgattcccagaatcatgggttttggaggcagccaccaagatactcaatcttacaccaacagataatggttct----tctctctctatttgaagtcac |
26560377 |
T |
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| Q |
434 |
tcacataatctcctagttagatatctagctatatgatcgattatcaactttctttgtattagtat |
498 |
Q |
| |
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|||| ||||||||||| |||||||||| || ||||| ||||||| |||| ||||||||||||| |
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| T |
26560376 |
tcacctaatctcctagctagatatctacttacatgattgattatcgacttgatttgtattagtat |
26560312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 134 - 408
Target Start/End: Complemental strand, 24890131 - 24889857
Alignment:
| Q |
134 |
taatggtgaacatgtcttcaggttggggaagatcaggtgctgcacttgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgt |
233 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||| |||||||| |
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| T |
24890131 |
taatagtgaacatgtcttctggttggggaagatcaggtgcagcacttgtagcaccttattgtgcatccaaatgggcaattgaaggactcactaagtctgt |
24890032 |
T |
|
| Q |
234 |
tgctgaagagtttcctaaaggaatggcagtggtggcactcaatacaggagtcatcagcactaacatacttgcgtcttgctacggtgcttcctcatctctc |
333 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||| |||| |||| ||||| || ||||| |||||||||||||| || |
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| T |
24890031 |
tgctgaagagttgcctaaaggaatggcagtagtggcactgaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctt |
24889932 |
T |
|
| Q |
334 |
tgtcaatccccagaatcatgggttttggaggcagccactaaaatactcaatcttacacccacaaacaatggtgct |
408 |
Q |
| |
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| |||||||||||||||||||| || ||||||||||| || ||||||||||||||||| || ||||||||||| |
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| T |
24889931 |
tatcaatccccagaatcatgggcttcagaggcagccaccaagatactcaatcttacacctgcagacaatggtgct |
24889857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 26560822 - 26560702
Alignment:
| Q |
20 |
ccggagtcattaacaagaacaaaaagatgtgggaggttccgtctgaagagtttgatttggtgatggataccaacttgaaaggtgctgccaatgtgttgag |
119 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26560822 |
ccggagtcgttaacaagaacaacaagatgtgggaggttccgtctgaagagtttgatttggtgatggataccaacttgaaaggtgctgccaatgtgttgag |
26560723 |
T |
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| Q |
120 |
gcacttcatacctttaatggt |
140 |
Q |
| |
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|| |||||||||||| ||||| |
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| T |
26560722 |
gcccttcatacctttgatggt |
26560702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 24890276 - 24890163
Alignment:
| Q |
25 |
gtcattaacaagaacaaaaagatgtgggaggttccgtctgaagagtttgatttggtgatggataccaacttgaaaggtgctgccaatgtgttgaggcact |
124 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24890276 |
gtcattaacaagaacagtaagatgtgggaggttccctctgaagagtttgattcggtgatggataccaacttgaaaggtactgccaatgtgttgaggcact |
24890177 |
T |
|
| Q |
125 |
tcatacctttaatg |
138 |
Q |
| |
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|||| ||| ||||| |
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| T |
24890176 |
tcattcctctaatg |
24890163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 146 - 354
Target Start/End: Original strand, 56436944 - 56437152
Alignment:
| Q |
146 |
tgtcttcaggttggggaagatcaggtgctgcacttgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtt |
245 |
Q |
| |
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||||||| |||||||||||||| ||||| |||||||| || ||||||| |||||||||||||| |||||||||||||| |||||||| ||| ||||||| |
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| T |
56436944 |
tgtcttctggttggggaagatcgggtgcagcacttgttgctccttactgtgcatccaaatgggctattgaaggactcacaaagtctgtagctaaagagtt |
56437043 |
T |
|
| Q |
246 |
tcctaaaggaatggcagtggtggcactcaatacaggagtcatcagcactaacatacttgcgtcttgctacggtgcttcctcatctctctgtcaatcccca |
345 |
Q |
| |
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|| |||||||||| || || ||||||||| | || ||||||| |||| |||| ||||| ||||||| ||||||||| | ||||| | ||||||||| |
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| T |
56437044 |
accacaaggaatggctgttgtcgcactcaatcctggtgtcatcaacactgacatgcttgcttcttgctttggtgcttccgcttctctttatcaatcccct |
56437143 |
T |
|
| Q |
346 |
gaatcatgg |
354 |
Q |
| |
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||||||||| |
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|
| T |
56437144 |
gaatcatgg |
56437152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 56436799 - 56436896
Alignment:
| Q |
31 |
aacaagaacaaaaagatgtgggaggttccgtctgaagagtttgatttggtgatggataccaacttgaaaggtgctgccaatgtgttgaggcacttcat |
128 |
Q |
| |
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||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||| |
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| T |
56436799 |
aacaagaacaacaagatgtgggaagttccttctcaagagtttgatttggtgatggatacaaacttgaaaggaactgccaatgtgttgagacatttcat |
56436896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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