View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_high_5 (Length: 488)
Name: NF2270_high_5
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 45317570 - 45317108
Alignment:
| Q |
18 |
ggtacctctgcttaaagtttctgattctggcaagtaatttatctttttactattcagtccttttattgaactatatttagatatagcggtgtctgtgtta |
117 |
Q |
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| T |
45317570 |
ggtacctctgcttaaagtttctgattctggcaagtaatttatctttttactattcagtccttttattgaactatatttagatatagcggtgtctgtgtta |
45317471 |
T |
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| Q |
118 |
tttagacatacaaaagccagacatcataacacataaacgaggtttgagaaaaaacaatataaaagtcggaaacggttt-gttgatgtcggattttgtgtc |
216 |
Q |
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| T |
45317470 |
tttagacatacaaaagccagacatcgtaagacataaacgaggtttgagaaaaaacaatataaaagtcggaaacggttttgttgatgtcggattttgtgtc |
45317371 |
T |
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| Q |
217 |
cgataaatatttctattagatagaagacattatgagtgaagtacttaaaaaacatcacatcattgattaatatatatttaacttaggaagtgactgcttg |
316 |
Q |
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| T |
45317370 |
caataaatatttctattagatagaagacattatgagtgaagtacttaaaaaacatcacatcattgattaatatatatttaacttaggaagtgactgcttg |
45317271 |
T |
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| Q |
317 |
gattacacctcaaggaagtgtccattttgtgttaattgtatccgtatgtaccattttctcagattatcatcttcagcaataacaatcatcccacgagcaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317270 |
gattacacctcaaggaagtgtccattttgtgttaattgtatccgtatgtaccattttctcagattatcatcttcagcaataacaatcatcccacgagcaa |
45317171 |
T |
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| Q |
417 |
cagctgtttctgaggtatttggcaaaatcaatcttttgcaagtgaatatccctgcagaataat |
479 |
Q |
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| T |
45317170 |
cagctgtttctgaggtatttggcaaaatcaatcttttgcaagtgaatatccctgcagaataat |
45317108 |
T |
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