View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2270_high_8 (Length: 453)
Name: NF2270_high_8
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Original strand, 41168430 - 41168859
Alignment:
| Q |
17 |
aagtttaagctaaattataatgttgtgttatgttaggattgaaccaaggtatcaagaaattttaagcaaggacatagtagaagctacaaaagatggtatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41168430 |
aagtttaagctaaattataatgttgtgttatgttaggattgaaccaaagtatcaagaaattttaagcaaggacatagtagaagctacaaaagatggtatc |
41168529 |
T |
|
| Q |
117 |
aaggttagagttattgcaggggaagctcttggaataaagtcatcaatttacacaaggacaccaacaatgtatttggactttactcttaaacctggatcac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41168530 |
aaggttagagttattgcaggggaagctcttggaataaagtcaccaatttacacaaggacaccaacaatgtatttggactttactcttaaacctggagcac |
41168629 |
T |
|
| Q |
217 |
acttgcaacaacttgtacctaaatcttggaatgcttttgtgtacatattggaaggagagggtattttcggaaacaaaaattctcatcctacaacctctca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41168630 |
acttgcaacaacttgtacctaaatcttggaatgcttttgtgtacatattggaaggagagggtattttcggaaacaaaaattctcatcctacaacctctca |
41168729 |
T |
|
| Q |
317 |
ccatattctccttctagggtttggggatggtctagaggcatggaataattcttctaaagtacttagattcattttggttggaggtgaaccattaggtgaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41168730 |
ccatattctccttctagggtttggggatggtctagaggcatggaataattcttctaaggtacttagattcattttggttggaggtgaaccattaggtgaa |
41168829 |
T |
|
| Q |
417 |
ccagtggtacaatttggaccctctgtgatg |
446 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
41168830 |
ccagtggtacaatttggaccctttgtgatg |
41168859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 41170382 - 41170612
Alignment:
| Q |
23 |
aagctaaattataatgttgtgttatgttaggattgaaccaaggtatcaagaaattttaagcaaggacatagtagaagctacaaaagatggtatcaaggtt |
122 |
Q |
| |
|
|||| ||||| ||||| ||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
41170382 |
aagcgaaattgtaatgatgttttatgttaggattgatccaagataccaagaaattttaagcaaggacatagtagaagctacgaaagatggtttcatggtt |
41170481 |
T |
|
| Q |
123 |
agagttattgcaggggaagctcttggaataaagtcatcaatttacacaaggacaccaacaatgtatttggactttactcttaaacctggatcacacttgc |
222 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||||| | ||| |||||||||||||||||||||||||| |||| |||| |||| |
|
|
| T |
41170482 |
agagttatggctggggaagctcctggaataaagtcaccgatt-----------------aatgtatttggactttactcttaaacatggagcacaattgc |
41170564 |
T |
|
| Q |
223 |
aacaacttgtacctaaatcttggaatgcttttgtgtacatattggaag |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
41170565 |
aacaacttgtacctaaatcttggaatgcttttgtttacatcttggaag |
41170612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University