View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2270_low_11 (Length: 388)
Name: NF2270_low_11
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_low_11 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 57 - 373
Target Start/End: Original strand, 8437652 - 8437968
Alignment:
| Q |
57 |
ttttatttatcatttttatccagctctatatcctatcatgaccatcaactgcgttataaannnnnnnatggagcatttggtcgccataataagataatta |
156 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
8437652 |
ttttatttatcatttttatcttgctctatatcctatcatgatcatcaaccacgttctaaatttttttatgaagtatttggtcgccataataagataattg |
8437751 |
T |
|
| Q |
157 |
tatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggatttctttcattttataataagaatttgaaactaattaagaaaatataac |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8437752 |
tatcatatcatgtctcaattcaatgtttaatgagacaataccgatattggatttctttcattttataataagaatttgaaactaattaagaaaatgtaac |
8437851 |
T |
|
| Q |
257 |
cactgtgagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatc |
356 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8437852 |
caccgtaagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattccctttgacattatc |
8437951 |
T |
|
| Q |
357 |
atgttggatgtgtaaaa |
373 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8437952 |
atgttggatgtgtaaaa |
8437968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 8414038 - 8414267
Alignment:
| Q |
1 |
gaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcatttttatccagctctatatcctatcatgacca |
100 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| || | ||||||||||||||| |||||| |||||||| | || ||||||| ||||||| | |
|
|
| T |
8414038 |
gaacaaaataatgttatttgattgattatcatgtgagcattca-catatgatatgatttgatttatg-tttttatcttgttcaatatcctttcatgacta |
8414135 |
T |
|
| Q |
101 |
tcaactgcgttataaannnnnnnatggagcatttggtcgccataataagataattatatcatatcatgtctcaattcaatgtttaatgagacaatactga |
200 |
Q |
| |
|
||||| ||| |||| |||| |||| | ||| |||||||||||||||||||||||| ||||||||||| ||| ||| |||||| ||||| | |
|
|
| T |
8414136 |
tcaaccaggttttaaaaaaaattatggtccattcgatcgtcataataagataattatatcatattatgtctcaatttaatatttgatgagataataccaa |
8414235 |
T |
|
| Q |
201 |
tattggatttctttcattttataataagaatt |
232 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |
|
|
| T |
8414236 |
tattaaatttctttcattttataataataatt |
8414267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8437240 - 8437304
Alignment:
| Q |
1 |
gaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttattta |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8437240 |
gaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttattta |
8437304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 8408850 - 8408940
Alignment:
| Q |
142 |
ataataagataattatatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggatttctttcattttataataagaatt |
232 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||| |||| |
|
|
| T |
8408850 |
ataataacataattgtatcatatcatgtctcaattcaatgtttgatgagacaatacagatattgagtttcttttattttataataataatt |
8408940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8428475 - 8428247
Alignment:
| Q |
1 |
gaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcatttttatccagctctatatcctatcatgacca |
100 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||| || ||||||||||||||||| ||||||| |||||||||| |||| ||||| ||| ||||||| |
|
|
| T |
8428475 |
gaacaacataatgttatttggttg-ttgtcatgtgagcattaaacatatgatatgattgtatttattatttttatccggctcaatatcttattatgacca |
8428377 |
T |
|
| Q |
101 |
tcaactgcgttataaannnnnnnatggagcatttggtcgccataataagataattatatcatatcatgtctcaattcaatgtttaatgagacaatactga |
200 |
Q |
| |
|
| || || |||| || ||| |||| |||| |||| ||| | |||||||| |||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
8428376 |
tgaaacatattctaaatttttta--ggtcaattaggtcaccatgataatctaaatgtatcatattatgtttcaattcaatgtttgatgagacaatattga |
8428279 |
T |
|
| Q |
201 |
tattggatttctttcattttataataagaatt |
232 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |
|
|
| T |
8428278 |
tattgagtttctttcattttataataataatt |
8428247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8450962 - 8451061
Alignment:
| Q |
1 |
gaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcatttttatccagctctatatcctatcatgacca |
100 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||| || ||||||||||||||||| ||||||| |||||||||| |||| ||||| ||| ||||||| |
|
|
| T |
8450962 |
gaacaacataatgttatttggttg-ttgtcatgtgagcattaaacatatgatatgattgtatttattatttttatccggctcaatatcttattatgacca |
8451060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 7916130 - 7916039
Alignment:
| Q |
136 |
gtcgccataataagataattatatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggatttctttcattttataataa |
227 |
Q |
| |
|
|||| ||| |||||||| || |||||||| ||||||||||||||||||| |||||| ||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
7916130 |
gtcgtcatgataagatatttgtatcatattatgtctcaattcaatgtttgatgagataatgctgatattgagtttcttttattttataataa |
7916039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8481174 - 8481079
Alignment:
| Q |
1 |
gaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcatttttatccagctctatatcctatcatg |
96 |
Q |
| |
|
|||||| || |||||||||||||||| || |||||| |||||||| ||||||| ||| ||||||||||||| |||| |||| ||||| ||||||| |
|
|
| T |
8481174 |
gaacaacatgatgttatttggttggtaattatgtgaacatcaaacacatgatataattgtatttatcattttaatccggctcaatatcttatcatg |
8481079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8408707 - 8408774
Alignment:
| Q |
1 |
gaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttatttatcat |
69 |
Q |
| |
|
|||||||||||| |||||||||||||||| | ||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
8408707 |
gaacaaaataatattatttggttggttattacgtgagcatcaaaca-atgatatgattgtatttatcat |
8408774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 8451103 - 8451197
Alignment:
| Q |
142 |
ataataagataattatatcatatcatgtctcaattcaatgtttaatgagaca----atactgatattggatttctttcattttataataagaatt |
232 |
Q |
| |
|
||||||| ||| |||||||||| |||| | |||||||||||| |||||||| |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
8451103 |
ataataatctaaatatatcatattatgtttgaattcaatgtttgatgagacaatatatactgatattgagtttctttcattttataataataatt |
8451197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 8447955 - 8448007
Alignment:
| Q |
2 |
aacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatat |
54 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
8447955 |
aacaaaacaatgttgtttggttggttatcatgtgagcattaaacacatgatat |
8448007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 8349982 - 8350032
Alignment:
| Q |
46 |
atatgatatgattttatttatcatttttatccagctctatatcctatcatg |
96 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| |||| ||||| ||||||| |
|
|
| T |
8349982 |
atatgatatgattgtatttatcattttaatccggctcaatatcttatcatg |
8350032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 8377035 - 8377095
Alignment:
| Q |
150 |
ataattatatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggattt |
210 |
Q |
| |
|
|||||| |||||||| ||||||| | ||||||||||| |||| ||||| ||||||| |||| |
|
|
| T |
8377035 |
ataattgtatcatattatgtctcgactcaatgtttaacgagaaaataccgatattgaattt |
8377095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 144 - 373
Target Start/End: Complemental strand, 73228 - 72999
Alignment:
| Q |
144 |
aataagataattatatcatatcatgtctcaattcaatgtttaatgagacaatactgatattggatttctttcattttataataagaatttgaaactaatt |
243 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
73228 |
aataagataattgtatcatatcatgtctcaattcaatatttaatgagaaaatactgatattgaatttctttcattttataataagaatttgaaagtaatt |
73129 |
T |
|
| Q |
244 |
aagaaaatataaccactgtgagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattcc |
343 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
73128 |
aagaaaatgtaaccactgtgagctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaagcttttccatagtagcctattcc |
73029 |
T |
|
| Q |
344 |
ctttgacattatcatgttggatgtgtaaaa |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
73028 |
ctttgacattatcatgttggatgtgtaaaa |
72999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 35978442 - 35978397
Alignment:
| Q |
149 |
gataattatatcatatcatgtctcaattcaatgtttaatgagacaa |
194 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
35978442 |
gataattgtatcatatcatgtctcaattcattgttcgatgagacaa |
35978397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University