View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2270_low_13 (Length: 372)
Name: NF2270_low_13
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_low_13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 23312278 - 23311919
Alignment:
| Q |
14 |
ggaaagcaaaaacaatagtctattacaggacgaccgccgcaacggaacataatctagtacaaccnnnnnnnnnnnnnnnnnngcttaaaacagagcacgc |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| |||||||||| || |
|
|
| T |
23312278 |
ggaaagcaaaaccaatagtctattacaggacgaccgccgcagcagaacataatctagtacaaccaaaaagaaaaagaaaaaagcttgaaacagagcaggc |
23312179 |
T |
|
| Q |
114 |
gaacacagtccctcaagcggcacagaccgatgaaccttctgatcaggataaacattggaacggtccaccttgacaggagcctgaaataactccacttgga |
213 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
23312178 |
gaacacagtccctcaagcggcacaaatcgatgaacctcttgatcaggataaacattggaacggttaaccttgacaggatcctgaaagaactccacttgga |
23312079 |
T |
|
| Q |
214 |
tgagggcatcctcaaagccctacccccaacactgttccgcaagggccacaacctcttctgcccactctcattgaagcaaagcctccacctccg-cgaggt |
312 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23312078 |
tgagggcatccttaaagccctacccccaacactgttccgcaagggccacaacctcttctgcccactctcattgaagcaaagcctccacctccgccgaggt |
23311979 |
T |
|
| Q |
313 |
cttgctaaccaaagcctgtttcaaagcgagtgcttccttacccatcggtactttagccgc |
372 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23311978 |
cttgctaaccaaaacctgtttcaaagcgagtgcttccttacccatcggtactttagccgc |
23311919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University