View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_low_15 (Length: 356)
Name: NF2270_low_15
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 42837956 - 42838281
Alignment:
| Q |
14 |
aatatgaaactgctaaggagcttttaaaaattattcagactccaagcataagggaggctgctgtagctgccaagttcaaaactaaaggtggttctcagat |
113 |
Q |
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| T |
42837956 |
aatatgaaactgctaaggagcttttaaaaattattcagactccaagcataagggaggctgctgtagctgccaagttcaaaactaaaggtggttctcagat |
42838055 |
T |
|
| Q |
114 |
gagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataagcttcattttagacgaatcattgctctt |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838056 |
gagaccatattgtgacttaccaacaaaagaagactgtcgacgccggactggttcctttatagcatgtaataagcttcattttagacgaatcattgctctt |
42838155 |
T |
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| Q |
214 |
catactgacattaatttgggagactgtccttttcttcgtacttgccggcacatgaacacatgtaaatatgttcattatgaggaagaccctacacctgatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42838156 |
catactgacattaatttgggagactgtccttttcttcgtacttgccggcacatgaacacatgtaaatatgttcactatgaggaagaccctacacctgatt |
42838255 |
T |
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| Q |
314 |
tgcctccaacaatgatgcgtgctcct |
339 |
Q |
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| T |
42838256 |
tgcctccaacaatgatgtgtgctcct |
42838281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 43913848 - 43913748
Alignment:
| Q |
86 |
agttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataa |
185 |
Q |
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| T |
43913848 |
agttcaaaactaaaggtggttctcaggtgaaacaatattgtgacttactgacaaaagaagattgtcggcgccagaccggttcctttgtagcatgtaataa |
43913749 |
T |
|
| Q |
186 |
g |
186 |
Q |
| |
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| |
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| T |
43913748 |
g |
43913748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 43913552 - 43913471
Alignment:
| Q |
188 |
ttcattttagacgaatcattgctcttcatactgacattaatttgggagactgtccttttcttcgtacttgccggcacatgaa |
269 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
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| T |
43913552 |
ttcattttagacgaatcattgctcttcacactgacattaatctgggagactgttcttttctagatacttgccggcacatgaa |
43913471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 43913369 - 43913303
Alignment:
| Q |
271 |
acatgtaaatatgttcattatgaggaagaccctacacctgatttgcctccaacaatgatgcgtgctc |
337 |
Q |
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||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| | |||||| |
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| T |
43913369 |
acatgtaaatatgttcactatgagtatgaccctacacctgatttgcctccaacaatgacgggtgctc |
43913303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 8635122 - 8635071
Alignment:
| Q |
188 |
ttcattttagacgaatcattgctcttcatactgacattaatttgggagactg |
239 |
Q |
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|||||||||||||||||||| |||||||||||| | ||| ||| |||||||| |
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| T |
8635122 |
ttcattttagacgaatcatttctcttcatactggctttagtttaggagactg |
8635071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 8623658 - 8623758
Alignment:
| Q |
86 |
agttcaaaactaaaggtggttctcagatgagaccatattgtgacttaccaacaaaagaagattgtcgacgccggactggttcctttatagcatgtaataa |
185 |
Q |
| |
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||||||||||||||| ||| | |||| |||| | | | ||||||| || | ||||||| || |||||||||||| ||||||||| |||||||| |||| |
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| T |
8623658 |
agttcaaaactaaagatggatatcaggtgaggcaacactgtgactgactgatgaaagaagtttatcgacgccggaccggttcctttgtagcatgtgataa |
8623757 |
T |
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| Q |
186 |
g |
186 |
Q |
| |
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| |
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|
| T |
8623758 |
g |
8623758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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