View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_low_16 (Length: 333)
Name: NF2270_low_16
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_low_16 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 104 - 333
Target Start/End: Original strand, 3424489 - 3424718
Alignment:
| Q |
104 |
tagaggcaggaaggaaaatgaatgtttttcgcttccatgatggtgtgtcacactcgtaacagagtttttatggccatatcaaggttttgtgatgatggta |
203 |
Q |
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| T |
3424489 |
tagaggcaggaaggaaaatgaatgtttttcgcttccatgatggtgtgtcacattcgtaacagagtttttatggccatatcaaggttttgtgatgatggta |
3424588 |
T |
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| Q |
204 |
acaaatgttttgctgtgatttctcatcctgaaaacaggtaatggacccgtatttaaaaccttgtttatgatctaagagtgtctgacgtgtgtttatgtcc |
303 |
Q |
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| T |
3424589 |
acaaatgttttgctgtgatttctcatcctgaaaacaggtaatggacccgtatttaaaaccttgtttatgatctaagagtgtctgacgtgcgtttatgtcc |
3424688 |
T |
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| Q |
304 |
aacaagatcgacacatgtgattacatttaa |
333 |
Q |
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| T |
3424689 |
aacaagatcgacacatgtgattacatttaa |
3424718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3424092 - 3424198
Alignment:
| Q |
1 |
ttgagcactagtttggaatagctcctctattggtattatgtaattgttgaaattgtatggtttagtcaatataaaagaaggccaaccgttttttcattta |
100 |
Q |
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| T |
3424092 |
ttgagcactagtttggaatagctcctctattggtattatgtaattgttgaaattgtatggtttagtcaatataaaagaaggccaaccgttttttcattta |
3424191 |
T |
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| Q |
101 |
ctttaga |
107 |
Q |
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| T |
3424192 |
ctttaga |
3424198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3404984 - 3404927
Alignment:
| Q |
1 |
ttgagcactagtttggaatagctcctctattggtattatgtaattgttgaaattgtat |
58 |
Q |
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| T |
3404984 |
ttgagcactagtttggagtagctcctcttttggtttttaataattgttgaaattgtat |
3404927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 43578845 - 43578800
Alignment:
| Q |
126 |
tgtttttcgcttccatgatggtgtgtcacactcgtaacagagtttt |
171 |
Q |
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| T |
43578845 |
tgtttttcgcttccataatggtgtgtcgcattcgtaacaaagtttt |
43578800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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